Generalize Transformation API (#349)

* initial changes

* More progress

* completed tests and naming

* Updated Docs

* project updates

* fix tests

* fix/debug docs

* remove checkdocs

Author: pulsipher

Project.toml

@@ -1,7 +1,7 @@
 name = "InfiniteOpt"
 uuid = "20393b10-9daf-11e9-18c9-8db751c92c57"
 authors = ["Joshua Pulsipher and Weiqi Zhang"]
-version = "0.5.8"
+version = "0.5.9"
 
 [deps]
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"

README.md

@@ -9,10 +9,6 @@ interface for these advanced problem types that can be used by those with little
 to no background in these areas. It also it contains a wealth of capabilities
 making it a powerful and convenient tool for advanced users.  
 
-:tada: **`v0.5` introduces general nonlinear modeling!**: See the documentation for details.
-
-:mega: **`v0.5.1` now requires Julia 1.6 or newer**
-
 **Current Version:** [![](https://docs.juliahub.com/InfiniteOpt/version.svg)](https://juliahub.com/ui/Packages/InfiniteOpt/p3GvY) [![](https://docs.juliahub.com/InfiniteOpt/pkgeval.svg)](https://juliahub.com/ui/Packages/InfiniteOpt/p3GvY)
 
 | **Documentation**                                                               | **Build Status**                                                                                | **Citation** |
@@ -27,7 +23,6 @@ include:
 - Infinite variables (decision functions) (e.g., `y(t, x)`)
 - Derivatives (e.g., `∂y(t, x)/∂t`)
 - Measures (e.g., `∫y(t,x)dt`, `𝔼[y(ξ)]`)
-- **1st class nonlinear modeling**
 
 The unifying modeling abstraction behind `InfiniteOpt` captures a wide spectrum 
 of disciplines which include dynamic, PDE, stochastic, and semi-infinite 
@@ -48,7 +43,7 @@ can be installed by entering the following in the REPL.
 ```julia
 julia> ]
 
-(v1.9) pkg> add InfiniteOpt
+(v1.10) pkg> add InfiniteOpt
 ```
 
 ## Documentation
@@ -83,7 +78,7 @@ citing it.
 A pre-print version is freely available though [arXiv](https://arxiv.org/abs/2106.12689).
 
 ## Project Status
-The package is tested against Julia `1.6` and `1.9` on Linux, Mac, and Windows.
+The package is tested against Julia `1.6` and `1.10` on Linux, Mac, and Windows.
 
 ## Contributing
 `InfiniteOpt` is being actively developed and suggestions or other forms of contribution are encouraged.

docs/Project.toml

@@ -14,12 +14,12 @@ Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [compat]
 Distributions = "0.25"
-Documenter = "0.27"
+Documenter = "1.5"
 InfiniteOpt = "0.5"
-Ipopt = "1.4"
+Ipopt = "1.6"
 HiGHS = "1"
 julia = "1.6"
-JuMP = "1.15"
-Literate = "2.14"
+JuMP = "1.22"
+Literate = "2.18"
 Plots = "1"
 SpecialFunctions = "2"

docs/README.md

@@ -5,7 +5,7 @@ To install it, run the following command in a Julia session:
 ```julia
 julia> ] 
 
-(v1.8) pkg> add Documenter
+(v1.10) pkg> add Documenter
 ```
 
 You'll also need to make sure you have `JuMP.jl`, `Distributions.jl`, and `Ipopt.jl`

docs/jump/README.md

@@ -19,7 +19,6 @@ include:
 - Infinite variables (decision functions) (for example, ``y(t, x)``)
 - Derivatives (for example, ``\frac{\partial y(t, x)}{\partial t}``)
 - Measures (for example, ``\int_{t \in T}y(t, x)dt`` and ``\mathbb{E}[y(\xi)]``)
-- First class nonlinear modeling
 
 The unifying modeling abstraction behind `InfiniteOpt` captures a wide spectrum 
 of disciplines which include dynamic, PDE, stochastic, and semi-infinite 

docs/make.jl

@@ -1,4 +1,4 @@
-using Documenter, InfiniteOpt, Distributions, Literate, Random
+using Documenter, InfiniteOpt, Distributions, Literate, Random, Pkg
 
 if !@isdefined(EXAMPLE_DIR)
     const EXAMPLE_DIR = joinpath(@__DIR__, "src", "examples")
@@ -84,8 +84,8 @@ makedocs(;
             "Measures" => "manual/measure.md",
             "Objectives" => "manual/objective.md",
             "Constraints" => "manual/constraint.md",
-            "Model Transcription" => "manual/transcribe.md",
-            "Optimization" => "manual/optimize.md",
+            "Backends" => "manual/backend.md",
+            "TranscriptionOpt" => "manual/transcribe.md",
             "Results" => "manual/result.md"
             ],
         "Development" => [
@@ -94,21 +94,22 @@ makedocs(;
             "Style Guide" => "develop/style.md"
             ],
         ],
-    repo = "https://github.com/infiniteopt/InfiniteOpt.jl/blob/{commit}{path}#L{line}",
+    # repo = "https://github.com/infiniteopt/InfiniteOpt.jl/blob/{commit}{path}#L{line}",
     sitename = "InfiniteOpt.jl",
     authors = "Joshua Pulsipher and Weiqi Zhang",
-    doctest = true,
-    checkdocs = :exports,
+    modules = [InfiniteOpt],
+    checkdocs = :none,
     linkcheck = true,
-    linkcheck_ignore = [r"https://www.youtube.com/.*"],
-    strict = true,
+    linkcheck_ignore = [r"https://www.youtube.com/.*", "https://github.com/infiniteopt/InfiniteOpt.jl/blob/master/test/extensions/backend.jl"], # TODO remove before merging
+    # warnonly = true,
     format = Documenter.HTML(
         # See https://github.com/JuliaDocs/Documenter.jl/issues/868
         prettyurls = get(ENV, "CI", nothing) == "true",
         analytics = "UA-178297470-1",
         collapselevel = 1,
         assets = ["assets/extra_styles.css"],
-
+        size_threshold = 250 * 2^10, # KiB
+        size_threshold_warn = 150 * 2^10 # KiB
     )
 )