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chimera not found #7

@paiardin

Description

@paiardin

Hi,
I've successfully installed gpathfinder on Mac OS 10.13, and latest Chimera 1.16.

When I run the command:

(gpathfinder) MacBook-Pro-di-Alessandro-4:Downloads paiardin$ gpath run input.yaml

I get this error:

GPathFinder: Identification of ligand pathways by a
multi-objective genetic algorithm
2019, InsiliChem · v1.2.0

Traceback (most recent call last):
  File "/opt/miniconda3/envs/gpathfinder/bin/gpath", line 10, in <module>
    sys.exit(cli())
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 722, in __call__
    return self.main(*args, **kwargs)
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 697, in main
    rv = self.invoke(ctx)
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 1066, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 895, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 535, in invoke
    return callback(*args, **kwargs)
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/gpath/cli/gpath_cli.py", line 121, in run
    load_chimera()
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/gpath/cli/gpath_cli.py", line 74, in load_chimera
    pychimera.patch_environ(nogui=nogui)
  File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/pychimera/core.py", line 164, in patch_environ
    os.execve(sys.executable, [sys.executable] + sys.argv, os.environ)
OSError: [Errno 2] No such file or directory

It seems that is a path in pychimera/core.py that cannot be found.

Thanks for your help!
Alessandro

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