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Hi,
I've successfully installed gpathfinder on Mac OS 10.13, and latest Chimera 1.16.
When I run the command:
(gpathfinder) MacBook-Pro-di-Alessandro-4:Downloads paiardin$ gpath run input.yaml
I get this error:
GPathFinder: Identification of ligand pathways by a
multi-objective genetic algorithm
2019, InsiliChem · v1.2.0
Traceback (most recent call last):
File "/opt/miniconda3/envs/gpathfinder/bin/gpath", line 10, in <module>
sys.exit(cli())
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 722, in __call__
return self.main(*args, **kwargs)
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/gpath/cli/gpath_cli.py", line 121, in run
load_chimera()
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/gpath/cli/gpath_cli.py", line 74, in load_chimera
pychimera.patch_environ(nogui=nogui)
File "/opt/miniconda3/envs/gpathfinder/lib/python2.7/site-packages/pychimera/core.py", line 164, in patch_environ
os.execve(sys.executable, [sys.executable] + sys.argv, os.environ)
OSError: [Errno 2] No such file or directory
It seems that is a path in pychimera/core.py that cannot be found.
Thanks for your help!
Alessandro
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