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stefsmeetsBaharis
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Co-authored-by: Daniel Tchoń <dantch@onet.eu>
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pyproject.toml

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@@ -12,6 +12,9 @@ requires-python = ">=3.9"
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authors = [
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{name = "Stef Smeets", email = "s.smeets@esciencecenter.nl"},
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]
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maintainers = [
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{name = "Daniel Mariusz Tchoń", email = "tchon@fzu.cz"}
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]
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keywords = [
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"electron-crystallography",
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"electron-microscopy",

readme.md

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- S. Smeets, X. Zou, and W. Wan, [Serial electron crystallography for structure determination and phase analysis of nanocrystalline materials](http://dx.doi.org/10.1107/S1600576718009500), J. Appl. Cryst. (2018). 51, 1262–1273
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## Source Code Structure
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* **`demos/`** - Jupyter demo notebooks
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* **`docs/`** - Documentation
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* **`src/`** - Source code for instamatic
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* **`src/instamatic/`**
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* **`calibrate/`** - Tools for calibration
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* **`camera/`** - Camera interaction code
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* **`config/`** - Configuration management
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* **`experiments/`** - Specific data collection routines
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* **`formats/`** - Image formats and other IO
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* **`gui/`** - GUI code
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* **`microscope/`** - Microscope interaction code
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* **`neural_network/`** - Crystal quality prediction
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* **`processing/`** - Data processing tools
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* **`server/`** - Manages interprocess/network communication
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* **`utils/`** - Helpful utilities
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* **`acquire_at_items.py`** - Stage movement/data acquisition engine
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* **`admin.py`** - Check for administrator
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* **`banner.py`** - Appropriately annoying thank you message
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* **`browser.py`** - Montage browsing class
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* **`controller.py`** - Main instrument interaction code
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* **`exceptions.py`** - Internal exceptions
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* **`goniotool.py`** - Goniotool (JEOL) interaction code
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* **`gridmontage.py`** - Grid montage data collection code
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* **`image_utils.py`** - Image transformation routines
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* **`imreg.py`** - Image registration (cross correlation)
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* **`io.py`** - Some io-related scripts
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* **`main.py`** - Main entry point
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* **`montage.py`** - Image stitching
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* **`navigation.py`** - Optimize navigation paths
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* **`tools.py`** - Collection of functions used throughout the code
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* **`scripts/`** - Helpful scripts
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* **`pyproject.toml`** - Dependency/build system declaration
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## Maintenance
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- 2025-now: [@Baharis](https://github.com/Baharis)
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- 2015-2025: [@stefsmeets](https://github.com/stefsmeets)

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