Support Python313, add setuptools to requirements (#707)

* update metadata to include Python3.13

* synchronize dependency versions, add missing setuptools and setuptools-scm

* add Python3.13 build to CI

* add supported versions badge tro README.md

Author: Zeitsperre

.github/workflows/ci.yaml

@@ -24,7 +24,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     steps:
       - uses: actions/checkout@v4
         with:

README.md

@@ -11,7 +11,7 @@
 | CI           | [![GitHub Workflow Status][github-ci-badge]][github-ci-link] [![Code Coverage Status][codecov-badge]][codecov-link] [![pre-commit.ci status][pre-commit.ci-badge]][pre-commit.ci-link] |
 | :----------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------: |
 | **Docs**     |                                                                     [![Documentation Status][rtd-badge]][rtd-link]                                                                     |
-| **Package**  |                                                          [![Conda][conda-badge]][conda-link] [![PyPI][pypi-badge]][pypi-link]                                                          |
+| **Package**  |                                     [![Conda][conda-badge]][conda-link] [![PyPI][pypi-badge]][pypi-link] [![Versions][versions-badge]][pypi-link]                                      |
 | **License**  |                                                                         [![License][license-badge]][repo-link]                                                                         |
 | **Citation** |                                                                         [![Zenodo][zenodo-badge]][zenodo-link]                                                                         |
 
@@ -110,3 +110,4 @@ conda install -c conda-forge intake-esm
 [repo-link]: https://github.com/intake/intake-esm
 [pre-commit.ci-badge]: https://results.pre-commit.ci/badge/github/intake/intake-esm/main.svg
 [pre-commit.ci-link]: https://results.pre-commit.ci/latest/github/intake/intake-esm/main
+[versions-badge]: https://img.shields.io/pypi/pyversions/intake-esm

ci/environment-docs.yml

@@ -4,30 +4,32 @@ channels:
   - nodefaults
 dependencies:
   - cftime
-  - dask>=2024.12
+  - dask >=2024.12
   - distributed
   - ecgtools >=2022.10.7
-  - fsspec>=2024.12
+  - fsspec >=2024.12
   - gcsfs >=2024.12
-  - intake>=2.0
+  - intake >=2.0
   - jupyterlab
   - matplotlib
   - myst-nb
-  - netcdf4!=1.6.1
-  - pandas>=2.1.0
+  - netcdf4 >=1.5.5,!=1.6.1
+  - pandas >=2.1.0
   - pip
   - pydantic>=2.0
   - python-graphviz
   - python=3.11
   - s3fs >=2024.12
-  - sphinx<6.0
+  - setuptools >=65.0.0
+  - setuptools_scm >=7.1.0
+  - sphinx <6.0
   - sphinx-copybutton
   - sphinx-design
   - watermark
-  - xarray-datatree>=0.0.9
-  - xarray>=2024.10
-  - zarr>=2.12
-  - furo>=2022.09.15
+  - xarray-datatree >=0.0.9
+  - xarray >=2024.10
+  - zarr >=2.12,<3.0
+  - furo >=2022.09.15
   - pip:
       - git+https://github.com/ncar-xdev/ecgtools
       - sphinxext-opengraph

ci/environment-upstream-dev.yml

@@ -6,20 +6,20 @@ dependencies:
   - cartopy
   - cftime
   - codecov
-  - dask>=2024.12
-  - fastprogress>=1.0.0
+  - dask >=2024.12
+  - fastprogress >=1.0.0
   - flaky >= 3.8.0
   - gcsfs >=2024.12
-  - h5netcdf>=0.8.1
+  - h5netcdf >=0.8.1
   - ipython
   - matplotlib
-  - netcdf4>=1.5.5
-  - pandas>=2.1.0
+  - netcdf4 >=1.5.5,!=1.6.1
+  - pandas >=2.1.0
   - pip
   - pooch
   - pre-commit
   - psutil
-  - pydantic>=2.0
+  - pydantic >=2.0
   - pydap
   - pyproj
   - pytest
@@ -30,10 +30,12 @@ dependencies:
   - pytest-xdist
   - regionmask
   - s3fs >=2024.12
+  - setuptools >=65.0.0
+  - setuptools_scm >=7.1.0
   - scipy
   - xarray-datatree
   - xgcm
-  - zarr>=2.10,<3.0
+  - zarr >=2.10,<3.0
   - pip:
       - git+https://github.com/intake/intake.git
       - git+https://github.com/pydata/xarray.git

ci/environment.yml

@@ -5,30 +5,32 @@ channels:
 dependencies:
   - cftime
   - codecov
-  - dask>=2024.12
-  - fastprogress>=1.0.0
-  - flaky >= 3.8.0
-  - fsspec>=2024.12
+  - dask >=2024.12
+  - fastprogress >=1.0.0
+  - flaky >=3.8.0
+  - fsspec >=2024.12
   - gcsfs >=2024.12
-  - h5netcdf>=0.8.1
-  - intake>=2.0
+  - h5netcdf >=0.8.1
+  - intake >=2.0
   - ipython
   - matplotlib
-  - netcdf4>=1.5.5
-  - pandas>=2.1.0
+  - netcdf4 >=1.5.5,!=1.6.1
+  - pandas >=2.1.0
   - pip
   - pooch
   - pre-commit
-  - pydantic>=2.0
+  - pydantic >=2.0
   - pydap
   - pytest
   - pytest-cov
   - pytest-sugar
   - pytest-xdist
   - pytest-mock
   - s3fs >=2024.12
+  - setuptools >=65.0.0
+  - setuptools_scm >=7.1.0
   - scipy
-  - xarray>=2024.10
+  - xarray >=2024.10
   - xarray-datatree
-  - zarr>=2.12,<3.0
+  - zarr >=2.12,<3.0
   # - pytest-icdiff

pyproject.toml

@@ -11,6 +11,7 @@
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
         "Programming Language :: Python :: 3.12",
+        "Programming Language :: Python :: 3.13",
         "Programming Language :: Python",
         "Topic :: Scientific/Engineering",
     ]

requirements.txt

@@ -4,7 +4,9 @@ fsspec>=2024.12
 intake>=2.0.0
 netCDF4>=1.5.5
 pandas>=2.1.0
+pydantic>=2.0
 requests>=2.24.0
+setuptools>=65.0.0
+setuptools_scm>=7.1.0
 xarray>=2024.10
 zarr>=2.12
-pydantic>=2.0