From 8e6319e3c384bb7c65e7cee03f619e243ad47103 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Wed, 23 Jul 2025 02:01:17 -0700
Subject: [PATCH 01/20] patch windows issue

- shell:true enabled, added basic sanitizations
---
 package-lock.json            | 995 +----------------------------------
 package.json                 |   5 -
 src/utils/commandExecutor.ts |  46 +-
 src/utils/geminiExecutor.ts  |  16 +-
 4 files changed, 69 insertions(+), 993 deletions(-)

diff --git a/package-lock.json b/package-lock.json
index 17a2766..c807257 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -10,10 +10,6 @@
       "license": "MIT",
       "dependencies": {
         "@modelcontextprotocol/sdk": "^0.5.0",
-        "ai": "^4.3.17",
-        "chalk": "^5.0.0",
-        "d3-shape": "^3.2.0",
-        "inquirer": "^9.0.0",
         "prismjs": "^1.30.0",
         "zod": "^3.25.76",
         "zod-to-json-schema": "^3.24.6"
@@ -22,11 +18,9 @@
         "gemini-mcp": "dist/index.js"
       },
       "devDependencies": {
-        "@types/inquirer": "^9.0.0",
         "@types/node": "^20.0.0",
         "archiver": "^7.0.1",
         "mermaid": "^11.9.0",
-        "nodemon": "^3.1.10",
         "tsx": "^4.0.0",
         "typescript": "^5.0.0",
         "vitepress": "^1.6.3",
@@ -36,76 +30,6 @@
         "node": ">=16.0.0"
       }
     },
-    "node_modules/@ai-sdk/provider": {
-      "version": "1.1.3",
-      "resolved": "https://registry.npmjs.org/@ai-sdk/provider/-/provider-1.1.3.tgz",
-      "integrity": "sha512-qZMxYJ0qqX/RfnuIaab+zp8UAeJn/ygXXAffR5I4N0n1IrvA6qBsjc8hXLmBiMV2zoXlifkacF7sEFnYnjBcqg==",
-      "license": "Apache-2.0",
-      "dependencies": {
-        "json-schema": "^0.4.0"
-      },
-      "engines": {
-        "node": ">=18"
-      }
-    },
-    "node_modules/@ai-sdk/provider-utils": {
-      "version": "2.2.8",
-      "resolved": "https://registry.npmjs.org/@ai-sdk/provider-utils/-/provider-utils-2.2.8.tgz",
-      "integrity": "sha512-fqhG+4sCVv8x7nFzYnFo19ryhAa3w096Kmc3hWxMQfW/TubPOmt3A6tYZhl4mUfQWWQMsuSkLrtjlWuXBVSGQA==",
-      "license": "Apache-2.0",
-      "dependencies": {
-        "@ai-sdk/provider": "1.1.3",
-        "nanoid": "^3.3.8",
-        "secure-json-parse": "^2.7.0"
-      },
-      "engines": {
-        "node": ">=18"
-      },
-      "peerDependencies": {
-        "zod": "^3.23.8"
-      }
-    },
-    "node_modules/@ai-sdk/react": {
-      "version": "1.2.12",
-      "resolved": "https://registry.npmjs.org/@ai-sdk/react/-/react-1.2.12.tgz",
-      "integrity": "sha512-jK1IZZ22evPZoQW3vlkZ7wvjYGYF+tRBKXtrcolduIkQ/m/sOAVcVeVDUDvh1T91xCnWCdUGCPZg2avZ90mv3g==",
-      "license": "Apache-2.0",
-      "dependencies": {
-        "@ai-sdk/provider-utils": "2.2.8",
-        "@ai-sdk/ui-utils": "1.2.11",
-        "swr": "^2.2.5",
-        "throttleit": "2.1.0"
-      },
-      "engines": {
-        "node": ">=18"
-      },
-      "peerDependencies": {
-        "react": "^18 || ^19 || ^19.0.0-rc",
-        "zod": "^3.23.8"
-      },
-      "peerDependenciesMeta": {
-        "zod": {
-          "optional": true
-        }
-      }
-    },
-    "node_modules/@ai-sdk/ui-utils": {
-      "version": "1.2.11",
-      "resolved": "https://registry.npmjs.org/@ai-sdk/ui-utils/-/ui-utils-1.2.11.tgz",
-      "integrity": "sha512-3zcwCc8ezzFlwp3ZD15wAPjf2Au4s3vAbKsXQVyhxODHcmu0iyPO2Eua6D/vicq/AUm/BAo60r97O6HU+EI0+w==",
-      "license": "Apache-2.0",
-      "dependencies": {
-        "@ai-sdk/provider": "1.1.3",
-        "@ai-sdk/provider-utils": "2.2.8",
-        "zod-to-json-schema": "^3.24.1"
-      },
-      "engines": {
-        "node": ">=18"
-      },
-      "peerDependencies": {
-        "zod": "^3.23.8"
-      }
-    },
     "node_modules/@algolia/autocomplete-core": {
       "version": "1.17.7",
       "resolved": "https://registry.npmjs.org/@algolia/autocomplete-core/-/autocomplete-core-1.17.7.tgz",
@@ -983,15 +907,6 @@
         "mlly": "^1.7.4"
       }
     },
-    "node_modules/@inquirer/figures": {
-      "version": "1.0.12",
-      "resolved": "https://registry.npmjs.org/@inquirer/figures/-/figures-1.0.12.tgz",
-      "integrity": "sha512-MJttijd8rMFcKJC8NYmprWr6hD3r9Gd9qUC0XwPNwoEPWSMVJwA2MlXxF+nhZZNMY+HXsWa+o7KY2emWYIn0jQ==",
-      "license": "MIT",
-      "engines": {
-        "node": ">=18"
-      }
-    },
     "node_modules/@isaacs/cliui": {
       "version": "8.0.2",
       "resolved": "https://registry.npmjs.org/@isaacs/cliui/-/cliui-8.0.2.tgz",
@@ -1148,15 +1063,6 @@
         "zod": "^3.23.8"
       }
     },
-    "node_modules/@opentelemetry/api": {
-      "version": "1.9.0",
-      "resolved": "https://registry.npmjs.org/@opentelemetry/api/-/api-1.9.0.tgz",
-      "integrity": "sha512-3giAOQvZiH5F9bMlMiv8+GSPMeqg0dbaeo58/0SlA9sxSqZhnUtxzX9/2FzyhS9sWQf5S0GJE0AKBrFqjpeYcg==",
-      "license": "Apache-2.0",
-      "engines": {
-        "node": ">=8.0.0"
-      }
-    },
     "node_modules/@pkgjs/parseargs": {
       "version": "0.11.0",
       "resolved": "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz",
@@ -1819,12 +1725,6 @@
         "@types/d3-selection": "*"
       }
     },
-    "node_modules/@types/diff-match-patch": {
-      "version": "1.0.36",
-      "resolved": "https://registry.npmjs.org/@types/diff-match-patch/-/diff-match-patch-1.0.36.tgz",
-      "integrity": "sha512-xFdR6tkm0MWvBfO8xXCSsinYxHcqkQUlcHeSpMC2ukzOb6lwQAfDmW+Qt0AvlGd8HpsS28qKsB+oPeJn9I39jg==",
-      "license": "MIT"
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     "node_modules/@types/estree": {
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@@ -1849,17 +1749,6 @@
         "@types/unist": "*"
       }
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-    "node_modules/@types/inquirer": {
-      "version": "9.0.8",
-      "resolved": "https://registry.npmjs.org/@types/inquirer/-/inquirer-9.0.8.tgz",
-      "integrity": "sha512-CgPD5kFGWsb8HJ5K7rfWlifao87m4ph8uioU7OTncJevmE/VLIqAAjfQtko578JZg7/f69K4FgqYym3gNr7DeA==",
-      "dev": true,
-      "license": "MIT",
-      "dependencies": {
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-        "rxjs": "^7.2.0"
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       "resolved": "https://registry.npmjs.org/@types/linkify-it/-/linkify-it-5.0.0.tgz",
@@ -1905,16 +1794,6 @@
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-    "node_modules/@types/through": {
-      "version": "0.0.33",
-      "resolved": "https://registry.npmjs.org/@types/through/-/through-0.0.33.tgz",
-      "integrity": "sha512-HsJ+z3QuETzP3cswwtzt2vEIiHBk/dCcHGhbmG5X3ecnwFD/lPrMpliGXxSCg03L9AhrdwA4Oz/qfspkDW+xGQ==",
-      "dev": true,
-      "license": "MIT",
-      "dependencies": {
-        "@types/node": "*"
-      }
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       "version": "2.0.7",
       "resolved": "https://registry.npmjs.org/@types/trusted-types/-/trusted-types-2.0.7.tgz",
@@ -2235,32 +2114,6 @@
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       }
     },
-    "node_modules/ai": {
-      "version": "4.3.17",
-      "resolved": "https://registry.npmjs.org/ai/-/ai-4.3.17.tgz",
-      "integrity": "sha512-uWqIQ94Nb1GTYtYElGHegJMOzv3r2mCKNFlKrqkft9xrfvIahTI5OdcnD5U9612RFGuUNGmSDTO1/YRNFXobaQ==",
-      "license": "Apache-2.0",
-      "dependencies": {
-        "@ai-sdk/provider": "1.1.3",
-        "@ai-sdk/provider-utils": "2.2.8",
-        "@ai-sdk/react": "1.2.12",
-        "@ai-sdk/ui-utils": "1.2.11",
-        "@opentelemetry/api": "1.9.0",
-        "jsondiffpatch": "0.6.0"
-      },
-      "engines": {
-        "node": ">=18"
-      },
-      "peerDependencies": {
-        "react": "^18 || ^19 || ^19.0.0-rc",
-        "zod": "^3.23.8"
-      },
-      "peerDependenciesMeta": {
-        "react": {
-          "optional": true
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@@ -2286,25 +2139,11 @@
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     },
-    "node_modules/ansi-escapes": {
-      "version": "4.3.2",
-      "resolved": "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-4.3.2.tgz",
-      "integrity": "sha512-gKXj5ALrKWQLsYG9jlTRmR/xKluxHV+Z9QEwNIgCfM1/uwPMCuzVVnh5mwTd+OuBZcwSIMbqssNWRm1lE51QaQ==",
-      "license": "MIT",
-      "dependencies": {
-        "type-fest": "^0.21.3"
-      },
-      "engines": {
-        "node": ">=8"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/sindresorhus"
-      }
-    },
     "node_modules/ansi-regex": {
       "version": "5.0.1",
       "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
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+      "dev": true,
       "license": "MIT",
       "engines": {
         "node": ">=8"
@@ -2314,6 +2153,7 @@
       "version": "4.3.0",
       "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
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+      "dev": true,
       "license": "MIT",
       "dependencies": {
         "color-convert": "^2.0.1"
@@ -2325,20 +2165,6 @@
         "url": "https://github.com/chalk/ansi-styles?sponsor=1"
       }
     },
-    "node_modules/anymatch": {
-      "version": "3.1.3",
-      "resolved": "https://registry.npmjs.org/anymatch/-/anymatch-3.1.3.tgz",
-      "integrity": "sha512-KMReFUr0B4t+D+OBkjR3KYqvocp2XaSzO55UcB6mgQMd3KbcE+mWTyvVV7D/zsdEbNnV6acZUutkiHQXvTr1Rw==",
-      "dev": true,
-      "license": "ISC",
-      "dependencies": {
-        "normalize-path": "^3.0.0",
-        "picomatch": "^2.0.4"
-      },
-      "engines": {
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     "node_modules/archiver": {
       "version": "7.0.1",
       "resolved": "https://registry.npmjs.org/archiver/-/archiver-7.0.1.tgz",
@@ -2494,6 +2320,7 @@
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+      "dev": true,
       "funding": [
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@@ -2510,19 +2337,6 @@
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       "license": "MIT"
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-      "dev": true,
-      "license": "MIT",
-      "engines": {
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-      },
-      "funding": {
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     "node_modules/birpc": {
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@@ -2533,17 +2347,6 @@
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-      "dependencies": {
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-        "inherits": "^2.0.4",
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@@ -2554,43 +2357,6 @@
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-      "dev": true,
-      "license": "MIT",
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-          "type": "github",
-          "url": "https://github.com/sponsors/feross"
-        },
-        {
-          "type": "patreon",
-          "url": "https://www.patreon.com/feross"
-        },
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-          "url": "https://feross.org/support"
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@@ -2621,18 +2387,6 @@
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-      "integrity": "sha512-zgVZuo2WcZgfUEmsn6eO3kINexW8RAE4maiQ8QNs8CtpPCSyMiYsULR3HQYkm3w8FIA3SberyMJMSldGsW+U3w==",
-      "license": "MIT",
-      "engines": {
-        "node": "^12.17.0 || ^14.13 || >=16.0.0"
-      },
-      "funding": {
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@@ -2655,12 +2409,6 @@
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@@ -2689,77 +2437,11 @@
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-      "license": "MIT",
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+      "dev": true,
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@@ -2772,6 +2454,7 @@
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       "resolved": "https://registry.npmjs.org/tsx/-/tsx-4.20.3.tgz",
@@ -5761,18 +4872,6 @@
         "fsevents": "~2.3.3"
       }
     },
-    "node_modules/type-fest": {
-      "version": "0.21.3",
-      "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.21.3.tgz",
-      "integrity": "sha512-t0rzBq87m3fVcduHDUFhKmyyX+9eo6WQjZvf51Ea/M0Q7+T374Jp1aUiyUl0GKxp8M/OETVHSDvmkyPgvX+X2w==",
-      "license": "(MIT OR CC0-1.0)",
-      "engines": {
-        "node": ">=10"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/sindresorhus"
-      }
-    },
     "node_modules/typescript": {
       "version": "5.8.3",
       "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.8.3.tgz",
@@ -5794,13 +4893,6 @@
       "dev": true,
       "license": "MIT"
     },
-    "node_modules/undefsafe": {
-      "version": "2.0.5",
-      "resolved": "https://registry.npmjs.org/undefsafe/-/undefsafe-2.0.5.tgz",
-      "integrity": "sha512-WxONCrssBM8TSPRqN5EmsjVrsv4A8X12J4ArBiiayv3DyyG3ZlIg6yysuuSYdZsVz3TKcTg2fd//Ujd4CHV1iA==",
-      "dev": true,
-      "license": "MIT"
-    },
     "node_modules/undici-types": {
       "version": "6.21.0",
       "resolved": "https://registry.npmjs.org/undici-types/-/undici-types-6.21.0.tgz",
@@ -5890,19 +4982,11 @@
         "node": ">= 0.8"
       }
     },
-    "node_modules/use-sync-external-store": {
-      "version": "1.5.0",
-      "resolved": "https://registry.npmjs.org/use-sync-external-store/-/use-sync-external-store-1.5.0.tgz",
-      "integrity": "sha512-Rb46I4cGGVBmjamjphe8L/UnvJD+uPPtTkNvX5mZgqdbavhI4EbgIWJiIHXJ8bc/i9EQGPRh4DwEURJ552Do0A==",
-      "license": "MIT",
-      "peerDependencies": {
-        "react": "^16.8.0 || ^17.0.0 || ^18.0.0 || ^19.0.0"
-      }
-    },
     "node_modules/util-deprecate": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
       "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==",
+      "dev": true,
       "license": "MIT"
     },
     "node_modules/uuid": {
@@ -6572,15 +5656,6 @@
         }
       }
     },
-    "node_modules/wcwidth": {
-      "version": "1.0.1",
-      "resolved": "https://registry.npmjs.org/wcwidth/-/wcwidth-1.0.1.tgz",
-      "integrity": "sha512-XHPEwS0q6TaxcvG85+8EYkbiCux2XtWG2mkc47Ng2A77BQu9+DqIOJldST4HgPkuea7dvKSj5VgX3P1d4rW8Tg==",
-      "license": "MIT",
-      "dependencies": {
-        "defaults": "^1.0.3"
-      }
-    },
     "node_modules/which": {
       "version": "2.0.2",
       "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
@@ -6597,20 +5672,6 @@
         "node": ">= 8"
       }
     },
-    "node_modules/wrap-ansi": {
-      "version": "6.2.0",
-      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-6.2.0.tgz",
-      "integrity": "sha512-r6lPcBGxZXlIcymEu7InxDMhdW0KDxpLgoFLcguasxCaJ/SOIZwINatK9KY/tf+ZrlywOKU0UDj3ATXUBfxJXA==",
-      "license": "MIT",
-      "dependencies": {
-        "ansi-styles": "^4.0.0",
-        "string-width": "^4.1.0",
-        "strip-ansi": "^6.0.0"
-      },
-      "engines": {
-        "node": ">=8"
-      }
-    },
     "node_modules/wrap-ansi-cjs": {
       "name": "wrap-ansi",
       "version": "7.0.0",
@@ -6630,18 +5691,6 @@
         "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
       }
     },
-    "node_modules/yoctocolors-cjs": {
-      "version": "2.1.2",
-      "resolved": "https://registry.npmjs.org/yoctocolors-cjs/-/yoctocolors-cjs-2.1.2.tgz",
-      "integrity": "sha512-cYVsTjKl8b+FrnidjibDWskAv7UKOfcwaVZdp/it9n1s9fU3IkgDbhdIRKCW4JDsAlECJY0ytoVPT3sK6kideA==",
-      "license": "MIT",
-      "engines": {
-        "node": ">=18"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/sindresorhus"
-      }
-    },
     "node_modules/zip-stream": {
       "version": "6.0.1",
       "resolved": "https://registry.npmjs.org/zip-stream/-/zip-stream-6.0.1.tgz",
diff --git a/package.json b/package.json
index 2a547c7..087a6ee 100644
--- a/package.json
+++ b/package.json
@@ -47,16 +47,11 @@
   ],
   "dependencies": {
     "@modelcontextprotocol/sdk": "^0.5.0",
-    "ai": "^4.3.17",
-    "chalk": "^5.0.0",
-    "d3-shape": "^3.2.0",
-    "inquirer": "^9.0.0",
     "prismjs": "^1.30.0",
     "zod": "^3.25.76",
     "zod-to-json-schema": "^3.24.6"
   },
   "devDependencies": {
-    "@types/inquirer": "^9.0.0",
     "@types/node": "^20.0.0",
     "archiver": "^7.0.1",
     "mermaid": "^11.9.0",
diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index b9b6f1b..4086b12 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -1,27 +1,59 @@
 import { spawn } from "child_process";
 import { Logger } from "./logger.js";
 
+// Sanitize command and arguments to prevent shell injection and flag injection
+function sanitizeInput(input: string): string {
+  // Remove or escape dangerous shell metacharacters
+  let sanitized = input.replace(/[;&|`$(){}[\]<>]/g, '');
+  // Prevent flag injection by removing leading dashes
+  sanitized = sanitized.replace(/^-+/, '');
+  return sanitized;
+}
+
+function validateCommand(command: string): boolean {
+  // Only allow specific whitelisted commands
+  const allowedCommands = ['gemini', 'gemini.exe', 'echo'];
+  const baseCommand = command.split(/[/\\]/).pop()?.toLowerCase() || '';
+  return allowedCommands.includes(baseCommand);
+}
+
 export async function executeCommand(
   command: string,
   args: string[],
   onProgress?: (newOutput: string) => void
 ): Promise<string> {
   return new Promise((resolve, reject) => {
+    // Validate command before execution
+    if (!validateCommand(command)) {
+      reject(new Error(`Command not allowed: ${command}. Only gemini, gemini.exe, and npx are permitted.`));
+      return;
+    }
+
+    // Sanitize arguments to prevent shell injection
+    const sanitizedArgs = args.map(arg => sanitizeInput(arg));
+    
     const startTime = Date.now();
-    Logger.commandExecution(command, args, startTime);
+    Logger.commandExecution(command, sanitizedArgs, startTime);
 
-    const childProcess = spawn(command, args, {
+    const childProcess = spawn(command, sanitizedArgs, {
       env: process.env,
-      shell: false,
+      shell: true,
       stdio: ["ignore", "pipe", "pipe"],
+      cwd: process.cwd()
     });
 
+    if (!childProcess.stdout || !childProcess.stderr) {
+      childProcess.kill();
+      reject(new Error("Process spawning failed: streams not available"));
+      return;
+    }
+
     let stdout = "";
     let stderr = "";
     let isResolved = false;
     let lastReportedLength = 0;
     
-    childProcess.stdout.on("data", (data) => {
+    childProcess.stdout.on("data", (data: Buffer) => {
       stdout += data.toString();
       
       // Report new content if callback provided
@@ -34,7 +66,7 @@ export async function executeCommand(
 
 
     // CLI level errors
-    childProcess.stderr.on("data", (data) => {
+    childProcess.stderr.on("data", (data: Buffer) => {
       stderr += data.toString();
       // find RESOURCE_EXHAUSTED when gemini-2.5-pro quota is exceeded
       if (stderr.includes("RESOURCE_EXHAUSTED")) {
@@ -58,14 +90,14 @@ export async function executeCommand(
         Logger.error(`Gemini Quota Error: ${JSON.stringify(errorJson, null, 2)}`);
       }
     });
-    childProcess.on("error", (error) => {
+    childProcess.on("error", (error: Error) => {
       if (!isResolved) {
         isResolved = true;
         Logger.error(`Process error:`, error);
         reject(new Error(`Failed to spawn command: ${error.message}`));
       }
     });
-    childProcess.on("close", (code) => {
+    childProcess.on("close", (code: number | null) => {
       if (!isResolved) {
         isResolved = true;
         if (code === 0) {
diff --git a/src/utils/geminiExecutor.ts b/src/utils/geminiExecutor.ts
index f7e79d3..6397ac1 100644
--- a/src/utils/geminiExecutor.ts
+++ b/src/utils/geminiExecutor.ts
@@ -91,10 +91,10 @@ ${prompt_processed}
   if (model) { args.push(CLI.FLAGS.MODEL, model); }
   if (sandbox) { args.push(CLI.FLAGS.SANDBOX); }
   
-  // Ensure @ symbols work cross-platform by wrapping in quotes if needed
-  const finalPrompt = prompt_processed.includes('@') && !prompt_processed.startsWith('"') 
-    ? `"${prompt_processed}"` 
-    : prompt_processed;
+  // Always quote the prompt to prevent shell argument splitting
+  const finalPrompt = prompt_processed.startsWith('"') && prompt_processed.endsWith('"')
+    ? prompt_processed 
+    : `"${prompt_processed.replace(/"/g, '\\"')}"`;
     
   args.push(CLI.FLAGS.PROMPT, finalPrompt);
   
@@ -111,10 +111,10 @@ ${prompt_processed}
         fallbackArgs.push(CLI.FLAGS.SANDBOX);
       }
       
-      // Same @ symbol handling for fallback
-      const fallbackPrompt = prompt_processed.includes('@') && !prompt_processed.startsWith('"') 
-        ? `"${prompt_processed}"` 
-        : prompt_processed;
+      // Same quoting handling for fallback
+      const fallbackPrompt = prompt_processed.startsWith('"') && prompt_processed.endsWith('"')
+        ? prompt_processed 
+        : `"${prompt_processed.replace(/"/g, '\\"')}"`;
         
       fallbackArgs.push(CLI.FLAGS.PROMPT, fallbackPrompt);
       try {

From 75c2991c7bbb5246715fc3fae96c125a56604d23 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Tue, 5 Aug 2025 13:34:03 -0700
Subject: [PATCH 02/20] shell + escaping

---
 src/utils/commandExecutor.ts | 71 ++++++++++++++++++++++++++++++------
 1 file changed, 60 insertions(+), 11 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index 4086b12..79adc11 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -3,29 +3,78 @@ import { Logger } from "./logger.js";
 
 // Sanitize command and arguments to prevent shell injection and flag injection
 function sanitizeInput(input: string): string {
-  // Remove or escape dangerous shell metacharacters
-  let sanitized = input.replace(/[;&|`$(){}[\]<>]/g, '');
-  // Prevent flag injection by removing leading dashes
-  sanitized = sanitized.replace(/^-+/, '');
-  return sanitized;
+  // Known safe flags that should not be sanitized
+  const knownFlags = ['-m', '-p', '-s', '-d', '-a', '-y', '-c', '-v', '-h', '--model', '--prompt', '--sandbox', '--debug', '--all_files', '--yolo', '--checkpointing', '--version', '--help'];
+  
+  // If this is a known flag, return it as-is
+  if (knownFlags.includes(input)) {
+    return input;
+  }
+  
+  if (process.platform === "win32") {
+    // Windows/PowerShell specific escaping
+    let sanitized = input;
+    
+    // Escape PowerShell special characters
+    sanitized = sanitized.replace(/[$`]/g, '`$&');
+    
+    // Handle quotes properly for Windows
+    if (sanitized.includes(' ') && !sanitized.startsWith('"')) {
+      sanitized = `"${sanitized.replace(/"/g, '""')}"`;
+    }
+    
+    // Prevent flag injection (but not for known flags)
+    sanitized = sanitized.replace(/^-+/, '');
+    
+    return sanitized;
+  } else {
+    // Unix-like systems
+    let sanitized = input.replace(/[;&|`$(){}[\]<>]/g, '');
+    // Prevent flag injection (but not for known flags)
+    sanitized = sanitized.replace(/^-+/, '');
+    return sanitized;
+  }
 }
 
 function validateCommand(command: string): boolean {
   // Only allow specific whitelisted commands
-  const allowedCommands = ['gemini', 'gemini.exe', 'echo'];
+  const allowedCommands = ['gemini', 'gemini.exe', 'gemini.cmd', 'gemini.bat', 'echo', 'echo.exe'];
   const baseCommand = command.split(/[/\\]/).pop()?.toLowerCase() || '';
   return allowedCommands.includes(baseCommand);
 }
 
+function resolveWindowsCommand(command: string): string {
+  if (process.platform !== "win32") return command;
+  
+  // Check if command already has extension
+  if (command.endsWith('.exe') || command.endsWith('.cmd') || command.endsWith('.bat')) {
+    return command;
+  }
+  
+  // Try to resolve with Windows extensions
+  const extensions = ['.exe', '.cmd', '.bat', ''];
+  for (const ext of extensions) {
+    const cmdWithExt = command + ext;
+    // Check if exists in PATH or is absolute path
+    if (validateCommand(cmdWithExt)) {
+      return cmdWithExt;
+    }
+  }
+  return command;
+}
+
+
 export async function executeCommand(
   command: string,
   args: string[],
   onProgress?: (newOutput: string) => void
 ): Promise<string> {
+  const resolvedCommand = resolveWindowsCommand(command);
+  
   return new Promise((resolve, reject) => {
     // Validate command before execution
-    if (!validateCommand(command)) {
-      reject(new Error(`Command not allowed: ${command}. Only gemini, gemini.exe, and npx are permitted.`));
+    if (!validateCommand(resolvedCommand)) {
+      reject(new Error(`Command not allowed: ${resolvedCommand}. Only gemini, gemini.exe, and npx are permitted.`));
       return;
     }
 
@@ -33,11 +82,11 @@ export async function executeCommand(
     const sanitizedArgs = args.map(arg => sanitizeInput(arg));
     
     const startTime = Date.now();
-    Logger.commandExecution(command, sanitizedArgs, startTime);
+    Logger.commandExecution(resolvedCommand, sanitizedArgs, startTime);
 
-    const childProcess = spawn(command, sanitizedArgs, {
+    const childProcess = spawn(resolvedCommand, sanitizedArgs, {
       env: process.env,
-      shell: true,
+      shell: process.platform === "win32",
       stdio: ["ignore", "pipe", "pipe"],
       cwd: process.cwd()
     });

From 5b6634252c0791c5ca8b3aedb4a76867d15a4f67 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Tue, 5 Aug 2025 14:18:03 -0700
Subject: [PATCH 03/20] gemini reference issue

---
 src/utils/commandExecutor.ts | 19 +++++++------------
 1 file changed, 7 insertions(+), 12 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index 79adc11..4af7e81 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -37,10 +37,12 @@ function sanitizeInput(input: string): string {
 }
 
 function validateCommand(command: string): boolean {
-  // Only allow specific whitelisted commands
-  const allowedCommands = ['gemini', 'gemini.exe', 'gemini.cmd', 'gemini.bat', 'echo', 'echo.exe'];
+  // Only allow specific whitelisted commands (without extensions)
+  const allowedCommands = ['gemini', 'echo'];
   const baseCommand = command.split(/[/\\]/).pop()?.toLowerCase() || '';
-  return allowedCommands.includes(baseCommand);
+  // Remove any extension for validation
+  const commandWithoutExt = baseCommand.replace(/\.(exe|cmd|bat|sh)$/, '');
+  return allowedCommands.includes(commandWithoutExt);
 }
 
 function resolveWindowsCommand(command: string): string {
@@ -51,15 +53,8 @@ function resolveWindowsCommand(command: string): string {
     return command;
   }
   
-  // Try to resolve with Windows extensions
-  const extensions = ['.exe', '.cmd', '.bat', ''];
-  for (const ext of extensions) {
-    const cmdWithExt = command + ext;
-    // Check if exists in PATH or is absolute path
-    if (validateCommand(cmdWithExt)) {
-      return cmdWithExt;
-    }
-  }
+  // For Windows, just return the command as-is and let Windows handle resolution
+  // Windows will automatically try .exe, .cmd, .bat extensions
   return command;
 }
 

From 4e529e02d1c1cc881ccf78635b60a3f1eb305777 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Tue, 5 Aug 2025 17:32:42 -0700
Subject: [PATCH 04/20] quotes

---
 src/utils/commandExecutor.ts | 14 +++++++++++---
 src/utils/geminiExecutor.ts  | 16 ++++------------
 2 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index 4af7e81..9a3af1e 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -15,16 +15,24 @@ function sanitizeInput(input: string): string {
     // Windows/PowerShell specific escaping
     let sanitized = input;
     
+    // Don't double-escape already quoted strings
+    if (sanitized.startsWith('"') && sanitized.endsWith('"')) {
+      // Already quoted, just escape internal quotes if needed
+      return sanitized;
+    }
+    
     // Escape PowerShell special characters
     sanitized = sanitized.replace(/[$`]/g, '`$&');
     
-    // Handle quotes properly for Windows
-    if (sanitized.includes(' ') && !sanitized.startsWith('"')) {
+    // Handle quotes properly for Windows - only add quotes if there are spaces
+    if (sanitized.includes(' ')) {
       sanitized = `"${sanitized.replace(/"/g, '""')}"`;
     }
     
     // Prevent flag injection (but not for known flags)
-    sanitized = sanitized.replace(/^-+/, '');
+    if (!sanitized.startsWith('"')) {
+      sanitized = sanitized.replace(/^-+/, '');
+    }
     
     return sanitized;
   } else {
diff --git a/src/utils/geminiExecutor.ts b/src/utils/geminiExecutor.ts
index 6397ac1..89e5c2f 100644
--- a/src/utils/geminiExecutor.ts
+++ b/src/utils/geminiExecutor.ts
@@ -91,12 +91,8 @@ ${prompt_processed}
   if (model) { args.push(CLI.FLAGS.MODEL, model); }
   if (sandbox) { args.push(CLI.FLAGS.SANDBOX); }
   
-  // Always quote the prompt to prevent shell argument splitting
-  const finalPrompt = prompt_processed.startsWith('"') && prompt_processed.endsWith('"')
-    ? prompt_processed 
-    : `"${prompt_processed.replace(/"/g, '\\"')}"`;
-    
-  args.push(CLI.FLAGS.PROMPT, finalPrompt);
+  // Pass prompt without pre-quoting - let the platform-specific handling in commandExecutor deal with it
+  args.push(CLI.FLAGS.PROMPT, prompt_processed);
   
   try {
     return await executeCommand(CLI.COMMANDS.GEMINI, args, onProgress);
@@ -111,12 +107,8 @@ ${prompt_processed}
         fallbackArgs.push(CLI.FLAGS.SANDBOX);
       }
       
-      // Same quoting handling for fallback
-      const fallbackPrompt = prompt_processed.startsWith('"') && prompt_processed.endsWith('"')
-        ? prompt_processed 
-        : `"${prompt_processed.replace(/"/g, '\\"')}"`;
-        
-      fallbackArgs.push(CLI.FLAGS.PROMPT, fallbackPrompt);
+      // Pass prompt without pre-quoting - same as above
+      fallbackArgs.push(CLI.FLAGS.PROMPT, prompt_processed);
       try {
         const result = await executeCommand(CLI.COMMANDS.GEMINI, fallbackArgs, onProgress);
         Logger.warn(`Successfully executed with ${MODELS.FLASH} fallback.`);

From 0be972ebdd7c8fd4255149bf13b8665b312d8aa4 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Tue, 5 Aug 2025 17:36:53 -0700
Subject: [PATCH 05/20] 3

---
 src/utils/commandExecutor.ts | 23 +++++------------------
 1 file changed, 5 insertions(+), 18 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index 9a3af1e..a247e21 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -12,27 +12,14 @@ function sanitizeInput(input: string): string {
   }
   
   if (process.platform === "win32") {
-    // Windows/PowerShell specific escaping
+    // Windows: properly escape for command line
     let sanitized = input;
     
-    // Don't double-escape already quoted strings
-    if (sanitized.startsWith('"') && sanitized.endsWith('"')) {
-      // Already quoted, just escape internal quotes if needed
-      return sanitized;
-    }
-    
-    // Escape PowerShell special characters
-    sanitized = sanitized.replace(/[$`]/g, '`$&');
-    
-    // Handle quotes properly for Windows - only add quotes if there are spaces
-    if (sanitized.includes(' ')) {
-      sanitized = `"${sanitized.replace(/"/g, '""')}"`;
-    }
+    // Escape existing quotes by doubling them (Windows convention)
+    sanitized = sanitized.replace(/"/g, '""');
     
-    // Prevent flag injection (but not for known flags)
-    if (!sanitized.startsWith('"')) {
-      sanitized = sanitized.replace(/^-+/, '');
-    }
+    // Always wrap in quotes for Windows to handle spaces and newlines
+    sanitized = `"${sanitized}"`;
     
     return sanitized;
   } else {

From 5e2b33ded5f37ce25470b3d672ea4af93ea39845 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Tue, 5 Aug 2025 20:18:33 -0700
Subject: [PATCH 06/20] 4

---
 src/utils/commandExecutor.ts | 33 +++++++++++----------------------
 src/utils/geminiExecutor.ts  |  8 ++++----
 2 files changed, 15 insertions(+), 26 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index a247e21..2c0be3d 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -3,32 +3,21 @@ import { Logger } from "./logger.js";
 
 // Sanitize command and arguments to prevent shell injection and flag injection
 function sanitizeInput(input: string): string {
-  // Known safe flags that should not be sanitized
-  const knownFlags = ['-m', '-p', '-s', '-d', '-a', '-y', '-c', '-v', '-h', '--model', '--prompt', '--sandbox', '--debug', '--all_files', '--yolo', '--checkpointing', '--version', '--help'];
-  
-  // If this is a known flag, return it as-is
-  if (knownFlags.includes(input)) {
-    return input;
+  // Don't sanitize known flags
+  if (input.startsWith('-')) {
+    return input;  // Keep flags as-is
   }
   
+  // For file paths and other arguments, just handle backslashes for Windows
   if (process.platform === "win32") {
-    // Windows: properly escape for command line
-    let sanitized = input;
-    
-    // Escape existing quotes by doubling them (Windows convention)
-    sanitized = sanitized.replace(/"/g, '""');
-    
-    // Always wrap in quotes for Windows to handle spaces and newlines
-    sanitized = `"${sanitized}"`;
-    
-    return sanitized;
-  } else {
-    // Unix-like systems
-    let sanitized = input.replace(/[;&|`$(){}[\]<>]/g, '');
-    // Prevent flag injection (but not for known flags)
-    sanitized = sanitized.replace(/^-+/, '');
-    return sanitized;
+    // Windows paths use backslashes, which need to be escaped in some contexts
+    // But for gemini CLI, we should keep them as-is since it expects Windows paths
+    return input;
   }
+  
+  // For Unix-like systems, basic sanitization
+  let sanitized = input.replace(/[;&|`$(){}[\]<>]/g, '');
+  return sanitized;
 }
 
 function validateCommand(command: string): boolean {
diff --git a/src/utils/geminiExecutor.ts b/src/utils/geminiExecutor.ts
index 89e5c2f..4d6a563 100644
--- a/src/utils/geminiExecutor.ts
+++ b/src/utils/geminiExecutor.ts
@@ -91,8 +91,8 @@ ${prompt_processed}
   if (model) { args.push(CLI.FLAGS.MODEL, model); }
   if (sandbox) { args.push(CLI.FLAGS.SANDBOX); }
   
-  // Pass prompt without pre-quoting - let the platform-specific handling in commandExecutor deal with it
-  args.push(CLI.FLAGS.PROMPT, prompt_processed);
+  // Wrap prompt in quotes to handle spaces and special characters
+  args.push(CLI.FLAGS.PROMPT, `"${prompt_processed.replace(/"/g, '\\"')}"`);
   
   try {
     return await executeCommand(CLI.COMMANDS.GEMINI, args, onProgress);
@@ -107,8 +107,8 @@ ${prompt_processed}
         fallbackArgs.push(CLI.FLAGS.SANDBOX);
       }
       
-      // Pass prompt without pre-quoting - same as above
-      fallbackArgs.push(CLI.FLAGS.PROMPT, prompt_processed);
+      // Wrap prompt in quotes to handle spaces and special characters
+      fallbackArgs.push(CLI.FLAGS.PROMPT, `"${prompt_processed.replace(/"/g, '\\"')}"`);
       try {
         const result = await executeCommand(CLI.COMMANDS.GEMINI, fallbackArgs, onProgress);
         Logger.warn(`Successfully executed with ${MODELS.FLASH} fallback.`);

From 961b873a9d174dd8efe40044eb469902d2b92177 Mon Sep 17 00:00:00 2001
From: alexx-ftw <eroszansan@gmail.com>
Date: Wed, 23 Jul 2025 14:39:26 +0100
Subject: [PATCH 07/20] fix windows spawn

---
 AGENTS.md                         | 16 ++++++++++++++++
 docs/resources/troubleshooting.md |  2 ++
 src/utils/commandExecutor.ts      |  5 +++++
 3 files changed, 23 insertions(+)
 create mode 100644 AGENTS.md

diff --git a/AGENTS.md b/AGENTS.md
new file mode 100644
index 0000000..ca309dc
--- /dev/null
+++ b/AGENTS.md
@@ -0,0 +1,16 @@
+# AGENT Guidance
+
+## Development
+- Use TypeScript with an object-oriented approach when adding new features.
+- Follow test-driven development. Add or update tests under `src` and run `npm test`.
+- Lint code with `npm run lint` before committing.
+- Build with `npm run build` to ensure TypeScript compiles.
+
+## Windows Compatibility
+- The command executor uses `shell: process.platform === "win32"` to avoid ENOENT errors.
+- Documented in `docs/resources/troubleshooting.md`.
+
+## Repository Scripts
+- `npm test` – runs the test suite (currently a placeholder).
+- `npm run lint` – checks TypeScript types via `tsc --noEmit`.
+- `npm run build` – compiles TypeScript to `dist/`.
diff --git a/docs/resources/troubleshooting.md b/docs/resources/troubleshooting.md
index 0a7c914..40972fa 100644
--- a/docs/resources/troubleshooting.md
+++ b/docs/resources/troubleshooting.md
@@ -342,6 +342,8 @@ gemini "Hello"
 - **NPX flag issues**: Use `--yes` instead of `-y`
 - **Path problems**: Restart terminal after Node.js installation
 - **Connection issues**: Ensure Windows Defender isn't blocking Node.js
+- **Spawn ENOENT errors**: Upgrade to gemini-mcp-tool >=1.1.5 or ensure the
+  command executor sets `shell: process.platform === "win32"`
 
 ### macOS
 - **Permission issues**: Use `sudo` if npm install fails
diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index 2c0be3d..fec5fe4 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -65,6 +65,11 @@ export async function executeCommand(
 
     const childProcess = spawn(resolvedCommand, sanitizedArgs, {
       env: process.env,
+<<<<<<< HEAD
+=======
+      // Windows requires spawning through the shell to resolve PATH correctly
+      // See: https://github.com/jamubc/gemini-mcp-tool/issues/9
+>>>>>>> f91e2d3 (fix windows spawn)
       shell: process.platform === "win32",
       stdio: ["ignore", "pipe", "pipe"],
       cwd: process.cwd()

From f5014e702ec6806b52722043a494cc9b25271803 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 00:57:25 -0700
Subject: [PATCH 08/20] cherry pick windows solution

---
 src/utils/geminiExecutor.ts  | 12 +++++++++++
 tests/geminiExecutor.test.ts | 42 ++++++++++++++++++++++++++++++++++++
 2 files changed, 54 insertions(+)
 create mode 100644 tests/geminiExecutor.test.ts

diff --git a/src/utils/geminiExecutor.ts b/src/utils/geminiExecutor.ts
index 4d6a563..1b469d7 100644
--- a/src/utils/geminiExecutor.ts
+++ b/src/utils/geminiExecutor.ts
@@ -91,6 +91,12 @@ ${prompt_processed}
   if (model) { args.push(CLI.FLAGS.MODEL, model); }
   if (sandbox) { args.push(CLI.FLAGS.SANDBOX); }
   
+  // Quote and escape prompt when executed through a shell (Windows)
+  const finalPrompt = process.platform === 'win32'
+    ? `"${prompt_processed.replace(/"/g, '""')}"`
+    : prompt_processed;
+    
+  args.push(CLI.FLAGS.PROMPT, finalPrompt);
   // Wrap prompt in quotes to handle spaces and special characters
   args.push(CLI.FLAGS.PROMPT, `"${prompt_processed.replace(/"/g, '\\"')}"`);
   
@@ -107,6 +113,12 @@ ${prompt_processed}
         fallbackArgs.push(CLI.FLAGS.SANDBOX);
       }
       
+      // Same quoting logic for fallback
+      const fallbackPrompt = process.platform === 'win32'
+        ? `"${prompt_processed.replace(/"/g, '""')}"`
+        : prompt_processed;
+        
+      fallbackArgs.push(CLI.FLAGS.PROMPT, fallbackPrompt);
       // Wrap prompt in quotes to handle spaces and special characters
       fallbackArgs.push(CLI.FLAGS.PROMPT, `"${prompt_processed.replace(/"/g, '\\"')}"`);
       try {
diff --git a/tests/geminiExecutor.test.ts b/tests/geminiExecutor.test.ts
new file mode 100644
index 0000000..3c6a112
--- /dev/null
+++ b/tests/geminiExecutor.test.ts
@@ -0,0 +1,42 @@
+import { describe, it, afterEach, expect, vi } from 'vitest';
+import { spawn } from 'child_process';
+import { executeGeminiCLI } from '../src/utils/geminiExecutor.js';
+
+vi.mock('child_process', () => ({
+  spawn: vi.fn(),
+}));
+
+describe('executeGeminiCLI', () => {
+  const originalPlatform = process.platform;
+
+  afterEach(() => {
+    vi.resetAllMocks();
+    Object.defineProperty(process, 'platform', { value: originalPlatform });
+  });
+
+  it('quotes prompt on win32 to avoid shell parsing issues', async () => {
+    Object.defineProperty(process, 'platform', { value: 'win32' });
+    const mockStdoutOn = vi.fn();
+    const mockStderrOn = vi.fn();
+    let closeCallback: (code: number) => void = () => {};
+    const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
+      if (event === 'close') {
+        closeCallback = cb;
+      }
+    });
+    (spawn as unknown as vi.Mock).mockReturnValue({
+      stdout: { on: mockStdoutOn },
+      stderr: { on: mockStderrOn },
+      on: mockOn,
+    });
+
+    const prompt = "Perfect! I've implemented your recommendations: fixed bug";
+    const promise = executeGeminiCLI(prompt);
+    closeCallback(0);
+    await promise;
+
+    const args = (spawn as unknown as vi.Mock).mock.calls[0][1] as string[];
+    const promptArgIndex = args.indexOf('-p') + 1;
+    expect(args[promptArgIndex]).toBe(`"${prompt.replace(/"/g, '""')}"`);
+  });
+});

From 0a7ae247bc8a3d1ad06513482d08ac812d7eb125 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 00:59:57 -0700
Subject: [PATCH 09/20] remove AGENTS.md

Should be a local development file.
---
 AGENTS.md | 16 ----------------
 1 file changed, 16 deletions(-)
 delete mode 100644 AGENTS.md

diff --git a/AGENTS.md b/AGENTS.md
deleted file mode 100644
index ca309dc..0000000
--- a/AGENTS.md
+++ /dev/null
@@ -1,16 +0,0 @@
-# AGENT Guidance
-
-## Development
-- Use TypeScript with an object-oriented approach when adding new features.
-- Follow test-driven development. Add or update tests under `src` and run `npm test`.
-- Lint code with `npm run lint` before committing.
-- Build with `npm run build` to ensure TypeScript compiles.
-
-## Windows Compatibility
-- The command executor uses `shell: process.platform === "win32"` to avoid ENOENT errors.
-- Documented in `docs/resources/troubleshooting.md`.
-
-## Repository Scripts
-- `npm test` – runs the test suite (currently a placeholder).
-- `npm run lint` – checks TypeScript types via `tsc --noEmit`.
-- `npm run build` – compiles TypeScript to `dist/`.

From d81ff3e57a2357661c0c8813f87b6a3b0b060c68 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 01:06:03 -0700
Subject: [PATCH 10/20] Update commandExecutor.ts

---
 src/utils/commandExecutor.ts | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index fec5fe4..2c0be3d 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -65,11 +65,6 @@ export async function executeCommand(
 
     const childProcess = spawn(resolvedCommand, sanitizedArgs, {
       env: process.env,
-<<<<<<< HEAD
-=======
-      // Windows requires spawning through the shell to resolve PATH correctly
-      // See: https://github.com/jamubc/gemini-mcp-tool/issues/9
->>>>>>> f91e2d3 (fix windows spawn)
       shell: process.platform === "win32",
       stdio: ["ignore", "pipe", "pipe"],
       cwd: process.cwd()

From b5601d8c74c6717c14ce722def572761804cb55f Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 02:14:26 -0700
Subject: [PATCH 11/20] fixed changeMode on windows

---
 src/utils/commandExecutor.ts | 85 +++++++-----------------------------
 src/utils/geminiExecutor.ts  | 54 ++++++++++++++---------
 2 files changed, 50 insertions(+), 89 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index 2c0be3d..d9a76b0 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -1,87 +1,34 @@
 import { spawn } from "child_process";
 import { Logger } from "./logger.js";
 
-// Sanitize command and arguments to prevent shell injection and flag injection
-function sanitizeInput(input: string): string {
-  // Don't sanitize known flags
-  if (input.startsWith('-')) {
-    return input;  // Keep flags as-is
-  }
-  
-  // For file paths and other arguments, just handle backslashes for Windows
-  if (process.platform === "win32") {
-    // Windows paths use backslashes, which need to be escaped in some contexts
-    // But for gemini CLI, we should keep them as-is since it expects Windows paths
-    return input;
-  }
-  
-  // For Unix-like systems, basic sanitization
-  let sanitized = input.replace(/[;&|`$(){}[\]<>]/g, '');
-  return sanitized;
-}
-
-function validateCommand(command: string): boolean {
-  // Only allow specific whitelisted commands (without extensions)
-  const allowedCommands = ['gemini', 'echo'];
-  const baseCommand = command.split(/[/\\]/).pop()?.toLowerCase() || '';
-  // Remove any extension for validation
-  const commandWithoutExt = baseCommand.replace(/\.(exe|cmd|bat|sh)$/, '');
-  return allowedCommands.includes(commandWithoutExt);
-}
-
-function resolveWindowsCommand(command: string): string {
-  if (process.platform !== "win32") return command;
-  
-  // Check if command already has extension
-  if (command.endsWith('.exe') || command.endsWith('.cmd') || command.endsWith('.bat')) {
-    return command;
-  }
-  
-  // For Windows, just return the command as-is and let Windows handle resolution
-  // Windows will automatically try .exe, .cmd, .bat extensions
-  return command;
-}
-
-
 export async function executeCommand(
   command: string,
   args: string[],
-  onProgress?: (newOutput: string) => void
+  onProgress?: (newOutput: string) => void,
+  stdinData?: string
 ): Promise<string> {
-  const resolvedCommand = resolveWindowsCommand(command);
-  
   return new Promise((resolve, reject) => {
-    // Validate command before execution
-    if (!validateCommand(resolvedCommand)) {
-      reject(new Error(`Command not allowed: ${resolvedCommand}. Only gemini, gemini.exe, and npx are permitted.`));
-      return;
-    }
-
-    // Sanitize arguments to prevent shell injection
-    const sanitizedArgs = args.map(arg => sanitizeInput(arg));
-    
     const startTime = Date.now();
-    Logger.commandExecution(resolvedCommand, sanitizedArgs, startTime);
+    Logger.commandExecution(command, args, startTime);
 
-    const childProcess = spawn(resolvedCommand, sanitizedArgs, {
+    const childProcess = spawn(command, args, {
       env: process.env,
-      shell: process.platform === "win32",
-      stdio: ["ignore", "pipe", "pipe"],
-      cwd: process.cwd()
+      shell: true,
+      stdio: stdinData ? ["pipe", "pipe", "pipe"] : ["ignore", "pipe", "pipe"],
     });
 
-    if (!childProcess.stdout || !childProcess.stderr) {
-      childProcess.kill();
-      reject(new Error("Process spawning failed: streams not available"));
-      return;
-    }
-
     let stdout = "";
     let stderr = "";
     let isResolved = false;
     let lastReportedLength = 0;
     
-    childProcess.stdout.on("data", (data: Buffer) => {
+    // Write stdin data if provided
+    if (stdinData && childProcess.stdin) {
+      childProcess.stdin.write(stdinData);
+      childProcess.stdin.end();
+    }
+    
+    childProcess.stdout?.on("data", (data) => {
       stdout += data.toString();
       
       // Report new content if callback provided
@@ -94,7 +41,7 @@ export async function executeCommand(
 
 
     // CLI level errors
-    childProcess.stderr.on("data", (data: Buffer) => {
+    childProcess.stderr?.on("data", (data) => {
       stderr += data.toString();
       // find RESOURCE_EXHAUSTED when gemini-2.5-pro quota is exceeded
       if (stderr.includes("RESOURCE_EXHAUSTED")) {
@@ -118,14 +65,14 @@ export async function executeCommand(
         Logger.error(`Gemini Quota Error: ${JSON.stringify(errorJson, null, 2)}`);
       }
     });
-    childProcess.on("error", (error: Error) => {
+    childProcess.on("error", (error) => {
       if (!isResolved) {
         isResolved = true;
         Logger.error(`Process error:`, error);
         reject(new Error(`Failed to spawn command: ${error.message}`));
       }
     });
-    childProcess.on("close", (code: number | null) => {
+    childProcess.on("close", (code) => {
       if (!isResolved) {
         isResolved = true;
         if (code === 0) {
diff --git a/src/utils/geminiExecutor.ts b/src/utils/geminiExecutor.ts
index 1b469d7..3eb63d0 100644
--- a/src/utils/geminiExecutor.ts
+++ b/src/utils/geminiExecutor.ts
@@ -88,41 +88,55 @@ ${prompt_processed}
   }
   
   const args = [];
-  if (model) { args.push(CLI.FLAGS.MODEL, model); }
+  if (model) { args.push(CLI.FLAGS.MODEL, `"${model}"`); }
   if (sandbox) { args.push(CLI.FLAGS.SANDBOX); }
   
-  // Quote and escape prompt when executed through a shell (Windows)
-  const finalPrompt = process.platform === 'win32'
-    ? `"${prompt_processed.replace(/"/g, '""')}"`
-    : prompt_processed;
-    
-  args.push(CLI.FLAGS.PROMPT, finalPrompt);
-  // Wrap prompt in quotes to handle spaces and special characters
-  args.push(CLI.FLAGS.PROMPT, `"${prompt_processed.replace(/"/g, '\\"')}"`);
+  // For complex prompts (changeMode or with @ symbols), use stdin instead of -p flag
+  // This avoids all shell escaping issues with quotes and newlines
+  const useStdin = changeMode || prompt_processed.includes('@');
+  let stdinData: string | undefined;
+  
+  if (useStdin) {
+    // Pass prompt via stdin to avoid shell escaping issues
+    stdinData = prompt_processed;
+    Logger.debug(`Using stdin for prompt (length: ${prompt_processed.length} chars)`);
+  } else {
+    // Simple prompts can use -p flag with proper escaping
+    const escapedPrompt = process.platform === 'win32'
+      ? prompt_processed.replace(/"/g, '""')  // Windows: escape quotes by doubling
+      : prompt_processed.replace(/"/g, '\\"'); // Unix: escape with backslash
+    args.push(CLI.FLAGS.PROMPT, `"${escapedPrompt}"`);
+  }
+  
+  // Log the exact command being executed for debugging
+  Logger.debug(`Executing command: ${CLI.COMMANDS.GEMINI} ${args.join(' ')}${useStdin ? ' [prompt via stdin]' : ''}`);
   
   try {
-    return await executeCommand(CLI.COMMANDS.GEMINI, args, onProgress);
+    return await executeCommand(CLI.COMMANDS.GEMINI, args, onProgress, stdinData);
   } catch (error) {
     const errorMessage = error instanceof Error ? error.message : String(error);
     if (errorMessage.includes(ERROR_MESSAGES.QUOTA_EXCEEDED) && model !== MODELS.FLASH) {
       Logger.warn(`${ERROR_MESSAGES.QUOTA_EXCEEDED}. Falling back to ${MODELS.FLASH}.`);
       await sendStatusMessage(STATUS_MESSAGES.FLASH_RETRY);
       const fallbackArgs = [];
-      fallbackArgs.push(CLI.FLAGS.MODEL, MODELS.FLASH);
+      fallbackArgs.push(CLI.FLAGS.MODEL, `"${MODELS.FLASH}"`);
       if (sandbox) {
         fallbackArgs.push(CLI.FLAGS.SANDBOX);
       }
       
-      // Same quoting logic for fallback
-      const fallbackPrompt = process.platform === 'win32'
-        ? `"${prompt_processed.replace(/"/g, '""')}"`
-        : prompt_processed;
-        
-      fallbackArgs.push(CLI.FLAGS.PROMPT, fallbackPrompt);
-      // Wrap prompt in quotes to handle spaces and special characters
-      fallbackArgs.push(CLI.FLAGS.PROMPT, `"${prompt_processed.replace(/"/g, '\\"')}"`);
+      // Use same stdin logic for fallback
+      if (!useStdin) {
+        const escapedPrompt = process.platform === 'win32'
+          ? prompt_processed.replace(/"/g, '""')
+          : prompt_processed.replace(/"/g, '\\"');
+        fallbackArgs.push(CLI.FLAGS.PROMPT, `"${escapedPrompt}"`);
+      }
+      
+      // Log the fallback command being executed for debugging
+      Logger.debug(`Executing fallback command: ${CLI.COMMANDS.GEMINI} ${fallbackArgs.join(' ')}${useStdin ? ' [prompt via stdin]' : ''}`);
+      
       try {
-        const result = await executeCommand(CLI.COMMANDS.GEMINI, fallbackArgs, onProgress);
+        const result = await executeCommand(CLI.COMMANDS.GEMINI, fallbackArgs, onProgress, stdinData);
         Logger.warn(`Successfully executed with ${MODELS.FLASH} fallback.`);
         await sendStatusMessage(STATUS_MESSAGES.FLASH_SUCCESS);
         return result;

From ebbe116b851df8f6cee2fb0207eb4c086238683e Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 02:36:59 -0700
Subject: [PATCH 12/20] comprehensive file handling and multiple flags

---
 src/utils/chunkCache.ts      | 44 ++++++++++++++------
 src/utils/commandExecutor.ts | 44 ++++++++++++--------
 tests/geminiExecutor.test.ts | 81 ++++++++++++++++++++++++++++++++++--
 3 files changed, 136 insertions(+), 33 deletions(-)

diff --git a/src/utils/chunkCache.ts b/src/utils/chunkCache.ts
index 3beecc6..d96f866 100644
--- a/src/utils/chunkCache.ts
+++ b/src/utils/chunkCache.ts
@@ -33,7 +33,7 @@ export function cacheChunks(prompt: string, chunks: EditChunk[]): string {
   
   // Generate deterministic cache key from prompt
   const promptHash = createHash('sha256').update(prompt).digest('hex');
-  const cacheKey = promptHash.slice(0, 8);
+  const cacheKey = promptHash.slice(0, 12); // Longer slice to reduce collision risk
   const filePath = path.join(CACHE_DIR, `${cacheKey}.json`);
   
   // Store with metadata
@@ -98,19 +98,25 @@ function cleanExpiredFiles(): void {
       
       const filePath = path.join(CACHE_DIR, file);
       try {
-        const stats = fs.statSync(filePath);
-        if (now - stats.mtimeMs > CACHE_TTL) {
+        const fileContent = fs.readFileSync(filePath, 'utf-8');
+        const data: CacheEntry = JSON.parse(fileContent);
+        
+        if (now - data.timestamp > CACHE_TTL) {
           fs.unlinkSync(filePath);
           cleaned++;
         }
       } catch (error) {
-        // Individual file error - continue with others
-        Logger.debug(`Error checking file ${file}: ${error}`);
+        // Individual file error - clean up bad file
+        Logger.debug(`Error processing file ${file}: ${error}`);
+        try {
+          fs.unlinkSync(filePath);
+          cleaned++;
+        } catch {}
       }
     }
     
     if (cleaned > 0) {
-      Logger.debug(`Cleaned ${cleaned} expired cache files`);
+      Logger.debug(`Cleaned ${cleaned} expired/invalid cache files`);
     }
   } catch (error) {
     // Non-critical, just log
@@ -125,12 +131,26 @@ function enforceFileLimits(): void {
   try {
     const files = fs.readdirSync(CACHE_DIR)
       .filter(f => f.endsWith('.json'))
-      .map(f => ({
-        name: f,
-        path: path.join(CACHE_DIR, f),
-        mtime: fs.statSync(path.join(CACHE_DIR, f)).mtimeMs
-      }))
-      .sort((a, b) => a.mtime - b.mtime); // Oldest first
+      .map(f => {
+        const filePath = path.join(CACHE_DIR, f);
+        try {
+          const fileContent = fs.readFileSync(filePath, 'utf-8');
+          const data: CacheEntry = JSON.parse(fileContent);
+          return {
+            name: f,
+            path: filePath,
+            timestamp: data.timestamp
+          };
+        } catch {
+          // Invalid file - remove immediately
+          try {
+            fs.unlinkSync(filePath);
+          } catch {}
+          return null;
+        }
+      })
+      .filter((entry): entry is { name: string; path: string; timestamp: number } => entry !== null)
+      .sort((a, b) => a.timestamp - b.timestamp); // Oldest first
     
     // Remove oldest files if over limit
     if (files.length > MAX_CACHE_FILES) {
diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index d9a76b0..daced29 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -1,4 +1,5 @@
-import { spawn } from "child_process";
+import { ChildProcessByStdio, spawn } from "child_process";
+import { Readable, Writable } from "stream";
 import { Logger } from "./logger.js";
 
 export async function executeCommand(
@@ -11,24 +12,32 @@ export async function executeCommand(
     const startTime = Date.now();
     Logger.commandExecution(command, args, startTime);
 
-    const childProcess = spawn(command, args, {
-      env: process.env,
-      shell: true,
-      stdio: stdinData ? ["pipe", "pipe", "pipe"] : ["ignore", "pipe", "pipe"],
-    });
-
+    let childProcess: ChildProcessByStdio<Writable | null, Readable, Readable>;
     let stdout = "";
     let stderr = "";
     let isResolved = false;
     let lastReportedLength = 0;
-    
-    // Write stdin data if provided
-    if (stdinData && childProcess.stdin) {
-      childProcess.stdin.write(stdinData);
-      childProcess.stdin.end();
+
+    if (stdinData) {
+      childProcess = spawn(command, args, {
+        env: process.env,
+        shell: true,
+        stdio: ['pipe', 'pipe', 'pipe'],
+      }) as ChildProcessByStdio<Writable, Readable, Readable>;
+
+      if (childProcess.stdin) {
+        childProcess.stdin.write(stdinData);
+        childProcess.stdin.end();
+      }
+    } else {
+      childProcess = spawn(command, args, {
+        env: process.env,
+        shell: true,
+        stdio: ['ignore', 'pipe', 'pipe'],
+      }) as ChildProcessByStdio<null, Readable, Readable>;
     }
-    
-    childProcess.stdout?.on("data", (data) => {
+
+    childProcess.stdout.on("data", (data: Buffer) => {
       stdout += data.toString();
       
       // Report new content if callback provided
@@ -39,9 +48,8 @@ export async function executeCommand(
       }
     });
 
-
     // CLI level errors
-    childProcess.stderr?.on("data", (data) => {
+    childProcess.stderr.on("data", (data: Buffer) => {
       stderr += data.toString();
       // find RESOURCE_EXHAUSTED when gemini-2.5-pro quota is exceeded
       if (stderr.includes("RESOURCE_EXHAUSTED")) {
@@ -65,14 +73,14 @@ export async function executeCommand(
         Logger.error(`Gemini Quota Error: ${JSON.stringify(errorJson, null, 2)}`);
       }
     });
-    childProcess.on("error", (error) => {
+    childProcess.on("error", (error: Error) => {
       if (!isResolved) {
         isResolved = true;
         Logger.error(`Process error:`, error);
         reject(new Error(`Failed to spawn command: ${error.message}`));
       }
     });
-    childProcess.on("close", (code) => {
+    childProcess.on("close", (code: number | null) => {
       if (!isResolved) {
         isResolved = true;
         if (code === 0) {
diff --git a/tests/geminiExecutor.test.ts b/tests/geminiExecutor.test.ts
index 3c6a112..37f256e 100644
--- a/tests/geminiExecutor.test.ts
+++ b/tests/geminiExecutor.test.ts
@@ -14,10 +14,12 @@ describe('executeGeminiCLI', () => {
     Object.defineProperty(process, 'platform', { value: originalPlatform });
   });
 
-  it('quotes prompt on win32 to avoid shell parsing issues', async () => {
+  it('quotes prompt on win32 with -p for simple prompts', async () => {
     Object.defineProperty(process, 'platform', { value: 'win32' });
     const mockStdoutOn = vi.fn();
     const mockStderrOn = vi.fn();
+    const mockWrite = vi.fn();
+    const mockEnd = vi.fn();
     let closeCallback: (code: number) => void = () => {};
     const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
       if (event === 'close') {
@@ -25,18 +27,91 @@ describe('executeGeminiCLI', () => {
       }
     });
     (spawn as unknown as vi.Mock).mockReturnValue({
+      stdin: { write: mockWrite, end: mockEnd },
       stdout: { on: mockStdoutOn },
       stderr: { on: mockStderrOn },
       on: mockOn,
     });
 
-    const prompt = "Perfect! I've implemented your recommendations: fixed bug";
+    const prompt = 'Perfect! I\'ve said "fixed bug"';
     const promise = executeGeminiCLI(prompt);
     closeCallback(0);
     await promise;
 
-    const args = (spawn as unknown as vi.Mock).mock.calls[0][1] as string[];
+    const spawnCall = (spawn as unknown as vi.Mock).mock.calls[0];
+    const args = spawnCall[1] as string[];
+    const stdio = spawnCall[2].stdio;
     const promptArgIndex = args.indexOf('-p') + 1;
     expect(args[promptArgIndex]).toBe(`"${prompt.replace(/"/g, '""')}"`);
+    expect(stdio).toEqual(['ignore', 'pipe', 'pipe']);
+    expect(mockWrite).not.toHaveBeenCalled();
+    expect(mockEnd).not.toHaveBeenCalled();
+  });
+
+  it('uses stdin for complex prompts with @ on win32', async () => {
+    Object.defineProperty(process, 'platform', { value: 'win32' });
+    const mockStdoutOn = vi.fn();
+    const mockStderrOn = vi.fn();
+    const mockWrite = vi.fn();
+    const mockEnd = vi.fn();
+    let closeCallback: (code: number) => void = () => {};
+    const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
+      if (event === 'close') {
+        closeCallback = cb;
+      }
+    });
+    (spawn as unknown as vi.Mock).mockReturnValue({
+      stdin: { write: mockWrite, end: mockEnd },
+      stdout: { on: mockStdoutOn },
+      stderr: { on: mockStderrOn },
+      on: mockOn,
+    });
+
+    const prompt = 'Analyze @src/file.ts and say "fix"';
+    const promise = executeGeminiCLI(prompt);
+    closeCallback(0);
+    await promise;
+
+    const spawnCall = (spawn as unknown as vi.Mock).mock.calls[0];
+    const args = spawnCall[1] as string[];
+    const stdio = spawnCall[2].stdio;
+    expect(args).not.toContain('-p');
+    expect(stdio).toEqual(['pipe', 'pipe', 'pipe']);
+    expect(mockWrite).toHaveBeenCalledWith(prompt);
+    expect(mockEnd).toHaveBeenCalled();
+  });
+
+  it('uses stdin for changeMode prompts', async () => {
+    Object.defineProperty(process, 'platform', { value: 'win32' });
+    const mockStdoutOn = vi.fn();
+    const mockStderrOn = vi.fn();
+    const mockWrite = vi.fn();
+    const mockEnd = vi.fn();
+    let closeCallback: (code: number) => void = () => {};
+    const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
+      if (event === 'close') {
+        closeCallback = cb;
+      }
+    });
+    (spawn as unknown as vi.Mock).mockReturnValue({
+      stdin: { write: mockWrite, end: mockEnd },
+      stdout: { on: mockStdoutOn },
+      stderr: { on: mockStderrOn },
+      on: mockOn,
+    });
+
+    const prompt = 'Debug this';
+    const promise = executeGeminiCLI(prompt, undefined, undefined, true);
+    closeCallback(0);
+    await promise;
+
+    const spawnCall = (spawn as unknown as vi.Mock).mock.calls[0];
+    const args = spawnCall[1] as string[];
+    const stdio = spawnCall[2].stdio;
+    expect(args).not.toContain('-p');
+    expect(stdio).toEqual(['pipe', 'pipe', 'pipe']);
+    expect(mockWrite.mock.calls[0][0]).toContain('[CHANGEMODE INSTRUCTIONS]');
+    expect(mockWrite.mock.calls[0][0]).toContain('USER REQUEST:\nDebug this');
+    expect(mockEnd).toHaveBeenCalled();
   });
 });

From 5330a7864cd65fee15738f296d684517a65f2cd9 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 02:45:54 -0700
Subject: [PATCH 13/20] update workflows

---
 .github/workflows/ci.yml          | 47 +++++++++++++++++--------------
 .github/workflows/deploy-docs.yml | 29 +++++++++++++------
 2 files changed, 47 insertions(+), 29 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index f865fbe..fc6a90a 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -2,32 +2,37 @@ name: CI
 
 on:
   push:
-    branches: [ main ]
+    branches: [main]
   pull_request:
-    branches: [ main ]
+    branches: [main]
 
 jobs:
-  test:
+  build-and-test:
+    name: Build & Test (Node ${{ matrix.node-version }})
     runs-on: ubuntu-latest
-    
+
     strategy:
       matrix:
         node-version: [16.x, 18.x, 20.x]
-    
+
     steps:
-    - uses: actions/checkout@v4
-    
-    - name: Use Node.js ${{ matrix.node-version }}
-      uses: actions/setup-node@v4
-      with:
-        node-version: ${{ matrix.node-version }}
-    
-    - name: Install dependencies
-      run: npm ci
-    
-    - name: Build
-      run: npm run build
-    
-    - name: Run tests
-      run: npm test
-      continue-on-error: true
\ No newline at end of file
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Use Node.js ${{ matrix.node-version }}
+        uses: actions/setup-node@v4
+        with:
+          node-version: ${{ matrix.node-version }}
+          cache: 'npm'
+
+      - name: Install dependencies
+        run: npm ci
+
+      - name: Lint
+        run: npm run lint
+
+      - name: Build
+        run: npm run build
+
+      - name: Run tests
+        run: npm test
\ No newline at end of file
diff --git a/.github/workflows/deploy-docs.yml b/.github/workflows/deploy-docs.yml
index 31c73d4..89306da 100644
--- a/.github/workflows/deploy-docs.yml
+++ b/.github/workflows/deploy-docs.yml
@@ -11,29 +11,42 @@ permissions:
   id-token: write
 
 concurrency:
-  group: pages
-  cancel-in-progress: false
+  group: "pages"
+  cancel-in-progress: true
 
 jobs:
   build:
+    name: Build Docs
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-node@v4
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Setup Node.js
+        uses: actions/setup-node@v4
         with:
           node-version: 20
-      - run: npm ci
-      - run: npm run docs:build
-      - uses: actions/upload-pages-artifact@v3
+          cache: 'npm'
+
+      - name: Install dependencies
+        run: npm ci
+
+      - name: Build docs
+        run: npm run docs:build
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
         with:
           path: docs/.vitepress/dist
 
   deploy:
+    name: Deploy Docs
     environment:
       name: github-pages
       url: ${{ steps.deployment.outputs.page_url }}
     needs: build
     runs-on: ubuntu-latest
     steps:
-      - id: deployment
+      - name: Deploy to GitHub Pages
+        id: deployment
         uses: actions/deploy-pages@v4
\ No newline at end of file

From 8f37aafe2222c95831ad7913e3ef197d82ce621b Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 03:02:06 -0700
Subject: [PATCH 14/20] bump version

---
 docs/.vitepress/theme/Layout.vue  |  2 +-
 docs/resources/troubleshooting.md |  9 +------
 package-lock.json                 | 43 ++-----------------------------
 package.json                      |  2 +-
 src/index.ts                      |  2 +-
 5 files changed, 6 insertions(+), 52 deletions(-)

diff --git a/docs/.vitepress/theme/Layout.vue b/docs/.vitepress/theme/Layout.vue
index 7185c30..67d56a6 100644
--- a/docs/.vitepress/theme/Layout.vue
+++ b/docs/.vitepress/theme/Layout.vue
@@ -6,7 +6,7 @@
     </template>
     <template #nav-bar-content-before>
       <div class="nav-warning">
-        🏷️ <span>1.1.4</span>
+        🏷️ <span>1.1.5</span>
       </div>
     </template>
     <template #sidebar-nav-after>
diff --git a/docs/resources/troubleshooting.md b/docs/resources/troubleshooting.md
index 40972fa..23563d2 100644
--- a/docs/resources/troubleshooting.md
+++ b/docs/resources/troubleshooting.md
@@ -326,14 +326,7 @@ gemini config set api_key YOUR_API_KEY
 
 ### Test Basic Functionality
 ```bash
-# Test Gemini CLI
-gemini "Hello"
-
-# Test MCP Tool with Flash model
-/gemini-cli:ping
-
-# Test file analysis with working model
-/gemini-cli:analyze -m gemini-2.5-flash @README.md summarize
+gemini
 ```
 
 ## Platform-Specific Issues
diff --git a/package-lock.json b/package-lock.json
index c807257..e3658bd 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,12 +1,12 @@
 {
   "name": "gemini-mcp-tool",
-  "version": "1.1.4",
+  "version": "1.1.5",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "gemini-mcp-tool",
-      "version": "1.1.4",
+      "version": "1.1.5",
       "license": "MIT",
       "dependencies": {
         "@modelcontextprotocol/sdk": "^0.5.0",
@@ -3715,15 +3715,6 @@
         "@pkgjs/parseargs": "^0.11.0"
       }
     },
-    "node_modules/js-tokens": {
-      "version": "4.0.0",
-      "resolved": "https://registry.npmjs.org/js-tokens/-/js-tokens-4.0.0.tgz",
-      "integrity": "sha512-RdJUflcE3cUzKiMqQgsCu06FPu9UdIJO0beYbPhHN4k6apgJtifcoCtT9bcxOpYBtpD2kCM6Sbzg4CausW/PKQ==",
-      "dev": true,
-      "license": "MIT",
-      "optional": true,
-      "peer": true
-    },
     "node_modules/katex": {
       "version": "0.16.22",
       "resolved": "https://registry.npmjs.org/katex/-/katex-0.16.22.tgz",
@@ -3866,21 +3857,6 @@
       "dev": true,
       "license": "MIT"
     },
-    "node_modules/loose-envify": {
-      "version": "1.4.0",
-      "resolved": "https://registry.npmjs.org/loose-envify/-/loose-envify-1.4.0.tgz",
-      "integrity": "sha512-lyuxPGr/Wfhrlem2CL/UcnUc1zcqKAImBDzukY7Y5F/yQiNdko6+fRLevlw1HgMySw7f611UIY408EtxRSoK3Q==",
-      "dev": true,
-      "license": "MIT",
-      "optional": true,
-      "peer": true,
-      "dependencies": {
-        "js-tokens": "^3.0.0 || ^4.0.0"
-      },
-      "bin": {
-        "loose-envify": "cli.js"
-      }
-    },
     "node_modules/lru-cache": {
       "version": "10.4.3",
       "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-10.4.3.tgz",
@@ -4399,21 +4375,6 @@
         "node": ">= 0.8"
       }
     },
-    "node_modules/react": {
-      "version": "18.3.1",
-      "resolved": "https://registry.npmjs.org/react/-/react-18.3.1.tgz",
-      "integrity": "sha512-wS+hAgJShR0KhEvPJArfuPVN1+Hz1t0Y6n5jLrGQbkb4urgPE/0Rve+1kMB1v/oWgHgm4WIcV+i7F2pTVj+2iQ==",
-      "dev": true,
-      "license": "MIT",
-      "optional": true,
-      "peer": true,
-      "dependencies": {
-        "loose-envify": "^1.1.0"
-      },
-      "engines": {
-        "node": ">=0.10.0"
-      }
-    },
     "node_modules/readdir-glob": {
       "version": "1.1.3",
       "resolved": "https://registry.npmjs.org/readdir-glob/-/readdir-glob-1.1.3.tgz",
diff --git a/package.json b/package.json
index 087a6ee..177b73a 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "gemini-mcp-tool",
-  "version": "1.1.4",
+  "version": "1.1.5",
   "description": "MCP server for Gemini CLI integration",
   "type": "module",
   "main": "dist/index.js",
diff --git a/src/index.ts b/src/index.ts
index 46c6118..d04139d 100644
--- a/src/index.ts
+++ b/src/index.ts
@@ -30,7 +30,7 @@ import {
 const server = new Server(
   {
     name: "gemini-cli-mcp",
-    version: "1.1.4",
+    version: "1.1.5",
   },{
     capabilities: {
       tools: {},

From 54df776e660139c5de117ca8561d0e499d612d80 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 03:26:32 -0700
Subject: [PATCH 15/20] mitigate shell risk for non-windows platforms

---
 src/utils/commandExecutor.ts | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index daced29..fcd885e 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -17,11 +17,14 @@ export async function executeCommand(
     let stderr = "";
     let isResolved = false;
     let lastReportedLength = 0;
+    
+    // Only use shell on Windows to avoid injection risks on Unix-like systems
+    const isWindows = process.platform === 'win32';
 
     if (stdinData) {
       childProcess = spawn(command, args, {
         env: process.env,
-        shell: true,
+        shell: isWindows,
         stdio: ['pipe', 'pipe', 'pipe'],
       }) as ChildProcessByStdio<Writable, Readable, Readable>;
 
@@ -32,7 +35,7 @@ export async function executeCommand(
     } else {
       childProcess = spawn(command, args, {
         env: process.env,
-        shell: true,
+        shell: isWindows,
         stdio: ['ignore', 'pipe', 'pipe'],
       }) as ChildProcessByStdio<null, Readable, Readable>;
     }

From 136a9a79edc5eeefaff692e8df1bf89911897451 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 03:53:59 -0700
Subject: [PATCH 16/20] Replace TypeScript test with JavaScript version

Removed tests/geminiExecutor.test.ts and added tests/geminiExecutor.test.js to switch test implementation from TypeScript to JavaScript. Updated package.json dependencies.
---
 package-lock.json            | 1392 ++++++++++++++++------------------
 package.json                 |    2 +-
 tests/geminiExecutor.test.js |   22 +
 tests/geminiExecutor.test.ts |  117 ---
 4 files changed, 676 insertions(+), 857 deletions(-)
 create mode 100644 tests/geminiExecutor.test.js
 delete mode 100644 tests/geminiExecutor.test.ts

diff --git a/package-lock.json b/package-lock.json
index e3658bd..2cdadcf 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -30,6 +30,22 @@
         "node": ">=16.0.0"
       }
     },
+    "node_modules/@algolia/abtesting": {
+      "version": "1.1.0",
+      "resolved": "https://registry.npmjs.org/@algolia/abtesting/-/abtesting-1.1.0.tgz",
+      "integrity": "sha512-sEyWjw28a/9iluA37KLGu8vjxEIlb60uxznfTUmXImy7H5NvbpSO6yYgmgH5KiD7j+zTUUihiST0jEP12IoXow==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "@algolia/client-common": "5.35.0",
+        "@algolia/requester-browser-xhr": "5.35.0",
+        "@algolia/requester-fetch": "5.35.0",
+        "@algolia/requester-node-http": "5.35.0"
+      },
+      "engines": {
+        "node": ">= 14.0.0"
+      }
+    },
     "node_modules/@algolia/autocomplete-core": {
       "version": "1.17.7",
       "resolved": "https://registry.npmjs.org/@algolia/autocomplete-core/-/autocomplete-core-1.17.7.tgz",
@@ -80,41 +96,41 @@
       }
     },
     "node_modules/@algolia/client-abtesting": {
-      "version": "5.29.0",
-      "resolved": "https://registry.npmjs.org/@algolia/client-abtesting/-/client-abtesting-5.29.0.tgz",
-      "integrity": "sha512-AM/6LYMSTnZvAT5IarLEKjYWOdV+Fb+LVs8JRq88jn8HH6bpVUtjWdOZXqX1hJRXuCAY8SdQfb7F8uEiMNXdYQ==",
+      "version": "5.35.0",
+      "resolved": "https://registry.npmjs.org/@algolia/client-abtesting/-/client-abtesting-5.35.0.tgz",
+      "integrity": "sha512-uUdHxbfHdoppDVflCHMxRlj49/IllPwwQ2cQ8DLC4LXr3kY96AHBpW0dMyi6ygkn2MtFCc6BxXCzr668ZRhLBQ==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@algolia/client-common": "5.29.0",
-        "@algolia/requester-browser-xhr": "5.29.0",
-        "@algolia/requester-fetch": "5.29.0",
-        "@algolia/requester-node-http": "5.29.0"
+        "@algolia/client-common": "5.35.0",
+        "@algolia/requester-browser-xhr": "5.35.0",
+        "@algolia/requester-fetch": "5.35.0",
+        "@algolia/requester-node-http": "5.35.0"
       },
       "engines": {
         "node": ">= 14.0.0"
       }
     },
     "node_modules/@algolia/client-analytics": {
-      "version": "5.29.0",
-      "resolved": "https://registry.npmjs.org/@algolia/client-analytics/-/client-analytics-5.29.0.tgz",
-      "integrity": "sha512-La34HJh90l0waw3wl5zETO8TuukeUyjcXhmjYZL3CAPLggmKv74mobiGRIb+mmBENybiFDXf/BeKFLhuDYWMMQ==",
+      "version": "5.35.0",
+      "resolved": "https://registry.npmjs.org/@algolia/client-analytics/-/client-analytics-5.35.0.tgz",
+      "integrity": "sha512-SunAgwa9CamLcRCPnPHx1V2uxdQwJGqb1crYrRWktWUdld0+B2KyakNEeVn5lln4VyeNtW17Ia7V7qBWyM/Skw==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@algolia/client-common": "5.29.0",
-        "@algolia/requester-browser-xhr": "5.29.0",
-        "@algolia/requester-fetch": "5.29.0",
-        "@algolia/requester-node-http": "5.29.0"
+        "@algolia/client-common": "5.35.0",
+        "@algolia/requester-browser-xhr": "5.35.0",
+        "@algolia/requester-fetch": "5.35.0",
+        "@algolia/requester-node-http": "5.35.0"
       },
       "engines": {
         "node": ">= 14.0.0"
       }
     },
     "node_modules/@algolia/client-common": {
-      "version": "5.29.0",
-      "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-5.29.0.tgz",
-      "integrity": "sha512-T0lzJH/JiCxQYtCcnWy7Jf1w/qjGDXTi2npyF9B9UsTvXB97GRC6icyfXxe21mhYvhQcaB1EQ/J2575FXxi2rA==",
+      "version": "5.35.0",
+      "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-5.35.0.tgz",
+      "integrity": "sha512-ipE0IuvHu/bg7TjT2s+187kz/E3h5ssfTtjpg1LbWMgxlgiaZIgTTbyynM7NfpSJSKsgQvCQxWjGUO51WSCu7w==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -122,151 +138,151 @@
       }
     },
     "node_modules/@algolia/client-insights": {
-      "version": "5.29.0",
-      "resolved": "https://registry.npmjs.org/@algolia/client-insights/-/client-insights-5.29.0.tgz",
-      "integrity": "sha512-A39F1zmHY9aev0z4Rt3fTLcGN5AG1VsVUkVWy6yQG5BRDScktH+U5m3zXwThwniBTDV1HrPgiGHZeWb67GkR2Q==",
+      "version": "5.35.0",
+      "resolved": "https://registry.npmjs.org/@algolia/client-insights/-/client-insights-5.35.0.tgz",
+      "integrity": "sha512-UNbCXcBpqtzUucxExwTSfAe8gknAJ485NfPN6o1ziHm6nnxx97piIbcBQ3edw823Tej2Wxu1C0xBY06KgeZ7gA==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
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     },
+    "node_modules/strip-ansi-cjs/node_modules/ansi-regex": {
+      "version": "5.0.1",
+      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
+      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=8"
+      }
+    },
     "node_modules/stylis": {
       "version": "4.3.6",
       "resolved": "https://registry.npmjs.org/stylis/-/stylis-4.3.6.tgz",
@@ -4834,9 +4711,9 @@
       }
     },
     "node_modules/typescript": {
-      "version": "5.8.3",
-      "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.8.3.tgz",
-      "integrity": "sha512-p1diW6TqL9L07nNxvRMM7hMMw4c5XOo/1ibL4aAIGmSAt9slTE1Xgw5KWuof2uTOvCg9BY7ZRi+GaF+7sfgPeQ==",
+      "version": "5.9.2",
+      "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.9.2.tgz",
+      "integrity": "sha512-CWBzXQrc/qOkhidw1OzBTQuYRbfyxDXJMVJ1XNwUHGROVmuaeiEm3OslpZ1RV96d7SKKjZKrSJu3+t/xlw3R9A==",
       "dev": true,
       "license": "Apache-2.0",
       "bin": {
@@ -4980,9 +4857,9 @@
       }
     },
     "node_modules/vfile-message": {
-      "version": "4.0.2",
-      "resolved": "https://registry.npmjs.org/vfile-message/-/vfile-message-4.0.2.tgz",
-      "integrity": "sha512-jRDZ1IMLttGj41KcZvlrYAaI3CfqpLpfpf+Mfig13viT6NKvRzWZ+lXz0Y5D60w6uJIBAOGq9mSHf0gktF0duw==",
+      "version": "4.0.3",
+      "resolved": "https://registry.npmjs.org/vfile-message/-/vfile-message-4.0.3.tgz",
+      "integrity": "sha512-QTHzsGd1EhbZs4AsQ20JX1rC3cOlt/IWJruk893DfLRr57lcnOeMaWG4K0JrRta4mIJZKth2Au3mM3u03/JWKw==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -5485,9 +5362,9 @@
       }
     },
     "node_modules/vitepress": {
-      "version": "1.6.3",
-      "resolved": "https://registry.npmjs.org/vitepress/-/vitepress-1.6.3.tgz",
-      "integrity": "sha512-fCkfdOk8yRZT8GD9BFqusW3+GggWYZ/rYncOfmgcDtP3ualNHCAg+Robxp2/6xfH1WwPHtGpPwv7mbA3qomtBw==",
+      "version": "1.6.4",
+      "resolved": "https://registry.npmjs.org/vitepress/-/vitepress-1.6.4.tgz",
+      "integrity": "sha512-+2ym1/+0VVrbhNyRoFFesVvBvHAVMZMK0rw60E3X/5349M1GuVdKeazuksqopEdvkKwKGs21Q729jX81/bkBJg==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -5596,17 +5473,17 @@
       "license": "MIT"
     },
     "node_modules/vue": {
-      "version": "3.5.17",
-      "resolved": "https://registry.npmjs.org/vue/-/vue-3.5.17.tgz",
-      "integrity": "sha512-LbHV3xPN9BeljML+Xctq4lbz2lVHCR6DtbpTf5XIO6gugpXUN49j2QQPcMj086r9+AkJ0FfUT8xjulKKBkkr9g==",
+      "version": "3.5.18",
+      "resolved": "https://registry.npmjs.org/vue/-/vue-3.5.18.tgz",
+      "integrity": "sha512-7W4Y4ZbMiQ3SEo+m9lnoNpV9xG7QVMLa+/0RFwwiAVkeYoyGXqWE85jabU4pllJNUzqfLShJ5YLptewhCWUgNA==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@vue/compiler-dom": "3.5.17",
-        "@vue/compiler-sfc": "3.5.17",
-        "@vue/runtime-dom": "3.5.17",
-        "@vue/server-renderer": "3.5.17",
-        "@vue/shared": "3.5.17"
+        "@vue/compiler-dom": "3.5.18",
+        "@vue/compiler-sfc": "3.5.18",
+        "@vue/runtime-dom": "3.5.18",
+        "@vue/server-renderer": "3.5.18",
+        "@vue/shared": "3.5.18"
       },
       "peerDependencies": {
         "typescript": "*"
@@ -5633,6 +5510,24 @@
         "node": ">= 8"
       }
     },
+    "node_modules/wrap-ansi": {
+      "version": "8.1.0",
+      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz",
+      "integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "ansi-styles": "^6.1.0",
+        "string-width": "^5.0.1",
+        "strip-ansi": "^7.0.1"
+      },
+      "engines": {
+        "node": ">=12"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
+      }
+    },
     "node_modules/wrap-ansi-cjs": {
       "name": "wrap-ansi",
       "version": "7.0.0",
@@ -5652,61 +5547,80 @@
         "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
       }
     },
-    "node_modules/zip-stream": {
-      "version": "6.0.1",
-      "resolved": "https://registry.npmjs.org/zip-stream/-/zip-stream-6.0.1.tgz",
-      "integrity": "sha512-zK7YHHz4ZXpW89AHXUPbQVGKI7uvkd3hzusTdotCg1UxyaVtg0zFJSTfW/Dq5f7OBBVnq6cZIaC8Ti4hb6dtCA==",
+    "node_modules/wrap-ansi-cjs/node_modules/ansi-regex": {
+      "version": "5.0.1",
+      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
+      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/wrap-ansi-cjs/node_modules/ansi-styles": {
+      "version": "4.3.0",
+      "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
+      "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "archiver-utils": "^5.0.0",
-        "compress-commons": "^6.0.2",
-        "readable-stream": "^4.0.0"
+        "color-convert": "^2.0.1"
       },
       "engines": {
-        "node": ">= 14"
+        "node": ">=8"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/ansi-styles?sponsor=1"
       }
     },
-    "node_modules/zip-stream/node_modules/buffer": {
-      "version": "6.0.3",
-      "resolved": "https://registry.npmjs.org/buffer/-/buffer-6.0.3.tgz",
-      "integrity": "sha512-FTiCpNxtwiZZHEZbcbTIcZjERVICn9yq/pDFkTl95/AxzD1naBctN7YO68riM/gLSDY7sdrMby8hofADYuuqOA==",
+    "node_modules/wrap-ansi-cjs/node_modules/emoji-regex": {
+      "version": "8.0.0",
+      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
+      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
+      "dev": true,
+      "license": "MIT"
+    },
+    "node_modules/wrap-ansi-cjs/node_modules/string-width": {
+      "version": "4.2.3",
+      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
+      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
       "dev": true,
-      "funding": [
-        {
-          "type": "github",
-          "url": "https://github.com/sponsors/feross"
-        },
-        {
-          "type": "patreon",
-          "url": "https://www.patreon.com/feross"
-        },
-        {
-          "type": "consulting",
-          "url": "https://feross.org/support"
-        }
-      ],
       "license": "MIT",
       "dependencies": {
-        "base64-js": "^1.3.1",
-        "ieee754": "^1.2.1"
+        "emoji-regex": "^8.0.0",
+        "is-fullwidth-code-point": "^3.0.0",
+        "strip-ansi": "^6.0.1"
+      },
+      "engines": {
+        "node": ">=8"
       }
     },
-    "node_modules/zip-stream/node_modules/readable-stream": {
-      "version": "4.7.0",
-      "resolved": "https://registry.npmjs.org/readable-stream/-/readable-stream-4.7.0.tgz",
-      "integrity": "sha512-oIGGmcpTLwPga8Bn6/Z75SVaH1z5dUut2ibSyAMVhmUggWpmDn2dapB0n7f8nwaSiRtepAsfJyfXIO5DCVAODg==",
+    "node_modules/wrap-ansi-cjs/node_modules/strip-ansi": {
+      "version": "6.0.1",
+      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
+      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "abort-controller": "^3.0.0",
-        "buffer": "^6.0.3",
-        "events": "^3.3.0",
-        "process": "^0.11.10",
-        "string_decoder": "^1.3.0"
+        "ansi-regex": "^5.0.1"
       },
       "engines": {
-        "node": "^12.22.0 || ^14.17.0 || >=16.0.0"
+        "node": ">=8"
+      }
+    },
+    "node_modules/zip-stream": {
+      "version": "6.0.1",
+      "resolved": "https://registry.npmjs.org/zip-stream/-/zip-stream-6.0.1.tgz",
+      "integrity": "sha512-zK7YHHz4ZXpW89AHXUPbQVGKI7uvkd3hzusTdotCg1UxyaVtg0zFJSTfW/Dq5f7OBBVnq6cZIaC8Ti4hb6dtCA==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "archiver-utils": "^5.0.0",
+        "compress-commons": "^6.0.2",
+        "readable-stream": "^4.0.0"
+      },
+      "engines": {
+        "node": ">= 14"
       }
     },
     "node_modules/zod": {
diff --git a/package.json b/package.json
index 177b73a..4338382 100644
--- a/package.json
+++ b/package.json
@@ -11,7 +11,7 @@
     "build": "tsc",
     "start": "node dist/index.js",
     "dev": "tsc && node dist/index.js",
-    "test": "echo \"No tests yet\" && exit 0",
+    "test": "node --test tests/*.test.js",
     "lint": "tsc --noEmit",
     "contribute": "tsx src/contribute.ts",
     "prepublishOnly": "echo '⚠️  Remember to test locally first!' && npm run build",
diff --git a/tests/geminiExecutor.test.js b/tests/geminiExecutor.test.js
new file mode 100644
index 0000000..ed26115
--- /dev/null
+++ b/tests/geminiExecutor.test.js
@@ -0,0 +1,22 @@
+import { describe, it } from 'node:test';
+import assert from 'node:assert';
+import { executeGeminiCLI } from '../dist/utils/geminiExecutor.js';
+
+describe('executeGeminiCLI integration tests', () => {
+  it('handles simple prompts', async () => {
+    const result = await executeGeminiCLI('echo test');
+    assert.ok(typeof result === 'string');
+    assert.ok(result.length > 0);
+  });
+
+  it('handles prompts with special characters', async () => {
+    const result = await executeGeminiCLI('What is 2+2?');
+    assert.ok(typeof result === 'string');
+    assert.ok(result.length > 0);
+  });
+
+  it('handles changeMode flag', async () => {
+    const result = await executeGeminiCLI('test prompt', undefined, undefined, true);
+    assert.ok(typeof result === 'string');
+  });
+});
\ No newline at end of file
diff --git a/tests/geminiExecutor.test.ts b/tests/geminiExecutor.test.ts
deleted file mode 100644
index 37f256e..0000000
--- a/tests/geminiExecutor.test.ts
+++ /dev/null
@@ -1,117 +0,0 @@
-import { describe, it, afterEach, expect, vi } from 'vitest';
-import { spawn } from 'child_process';
-import { executeGeminiCLI } from '../src/utils/geminiExecutor.js';
-
-vi.mock('child_process', () => ({
-  spawn: vi.fn(),
-}));
-
-describe('executeGeminiCLI', () => {
-  const originalPlatform = process.platform;
-
-  afterEach(() => {
-    vi.resetAllMocks();
-    Object.defineProperty(process, 'platform', { value: originalPlatform });
-  });
-
-  it('quotes prompt on win32 with -p for simple prompts', async () => {
-    Object.defineProperty(process, 'platform', { value: 'win32' });
-    const mockStdoutOn = vi.fn();
-    const mockStderrOn = vi.fn();
-    const mockWrite = vi.fn();
-    const mockEnd = vi.fn();
-    let closeCallback: (code: number) => void = () => {};
-    const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
-      if (event === 'close') {
-        closeCallback = cb;
-      }
-    });
-    (spawn as unknown as vi.Mock).mockReturnValue({
-      stdin: { write: mockWrite, end: mockEnd },
-      stdout: { on: mockStdoutOn },
-      stderr: { on: mockStderrOn },
-      on: mockOn,
-    });
-
-    const prompt = 'Perfect! I\'ve said "fixed bug"';
-    const promise = executeGeminiCLI(prompt);
-    closeCallback(0);
-    await promise;
-
-    const spawnCall = (spawn as unknown as vi.Mock).mock.calls[0];
-    const args = spawnCall[1] as string[];
-    const stdio = spawnCall[2].stdio;
-    const promptArgIndex = args.indexOf('-p') + 1;
-    expect(args[promptArgIndex]).toBe(`"${prompt.replace(/"/g, '""')}"`);
-    expect(stdio).toEqual(['ignore', 'pipe', 'pipe']);
-    expect(mockWrite).not.toHaveBeenCalled();
-    expect(mockEnd).not.toHaveBeenCalled();
-  });
-
-  it('uses stdin for complex prompts with @ on win32', async () => {
-    Object.defineProperty(process, 'platform', { value: 'win32' });
-    const mockStdoutOn = vi.fn();
-    const mockStderrOn = vi.fn();
-    const mockWrite = vi.fn();
-    const mockEnd = vi.fn();
-    let closeCallback: (code: number) => void = () => {};
-    const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
-      if (event === 'close') {
-        closeCallback = cb;
-      }
-    });
-    (spawn as unknown as vi.Mock).mockReturnValue({
-      stdin: { write: mockWrite, end: mockEnd },
-      stdout: { on: mockStdoutOn },
-      stderr: { on: mockStderrOn },
-      on: mockOn,
-    });
-
-    const prompt = 'Analyze @src/file.ts and say "fix"';
-    const promise = executeGeminiCLI(prompt);
-    closeCallback(0);
-    await promise;
-
-    const spawnCall = (spawn as unknown as vi.Mock).mock.calls[0];
-    const args = spawnCall[1] as string[];
-    const stdio = spawnCall[2].stdio;
-    expect(args).not.toContain('-p');
-    expect(stdio).toEqual(['pipe', 'pipe', 'pipe']);
-    expect(mockWrite).toHaveBeenCalledWith(prompt);
-    expect(mockEnd).toHaveBeenCalled();
-  });
-
-  it('uses stdin for changeMode prompts', async () => {
-    Object.defineProperty(process, 'platform', { value: 'win32' });
-    const mockStdoutOn = vi.fn();
-    const mockStderrOn = vi.fn();
-    const mockWrite = vi.fn();
-    const mockEnd = vi.fn();
-    let closeCallback: (code: number) => void = () => {};
-    const mockOn = vi.fn((event: string, cb: (code: number) => void) => {
-      if (event === 'close') {
-        closeCallback = cb;
-      }
-    });
-    (spawn as unknown as vi.Mock).mockReturnValue({
-      stdin: { write: mockWrite, end: mockEnd },
-      stdout: { on: mockStdoutOn },
-      stderr: { on: mockStderrOn },
-      on: mockOn,
-    });
-
-    const prompt = 'Debug this';
-    const promise = executeGeminiCLI(prompt, undefined, undefined, true);
-    closeCallback(0);
-    await promise;
-
-    const spawnCall = (spawn as unknown as vi.Mock).mock.calls[0];
-    const args = spawnCall[1] as string[];
-    const stdio = spawnCall[2].stdio;
-    expect(args).not.toContain('-p');
-    expect(stdio).toEqual(['pipe', 'pipe', 'pipe']);
-    expect(mockWrite.mock.calls[0][0]).toContain('[CHANGEMODE INSTRUCTIONS]');
-    expect(mockWrite.mock.calls[0][0]).toContain('USER REQUEST:\nDebug this');
-    expect(mockEnd).toHaveBeenCalled();
-  });
-});

From 222eb6b1ab913945501b551679318fcb483ed1da Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 04:01:06 -0700
Subject: [PATCH 17/20] check for gemini for CI

---
 tests/geminiExecutor.test.js | 19 ++++++++++++++++++-
 1 file changed, 18 insertions(+), 1 deletion(-)

diff --git a/tests/geminiExecutor.test.js b/tests/geminiExecutor.test.js
index ed26115..187ee03 100644
--- a/tests/geminiExecutor.test.js
+++ b/tests/geminiExecutor.test.js
@@ -1,8 +1,25 @@
 import { describe, it } from 'node:test';
 import assert from 'node:assert';
+import { spawn } from 'child_process';
 import { executeGeminiCLI } from '../dist/utils/geminiExecutor.js';
 
-describe('executeGeminiCLI integration tests', () => {
+// Check if gemini CLI is available
+function isGeminiAvailable() {
+  return new Promise((resolve) => {
+    const child = spawn('gemini', ['--version'], { stdio: 'ignore' });
+    child.on('close', (code) => resolve(code === 0));
+    child.on('error', () => resolve(false));
+  });
+}
+
+describe('executeGeminiCLI integration tests', async () => {
+  const geminiAvailable = await isGeminiAvailable();
+  
+  if (!geminiAvailable) {
+    console.log('⚠️  Skipping integration tests: gemini CLI not available');
+    return;
+  }
+
   it('handles simple prompts', async () => {
     const result = await executeGeminiCLI('echo test');
     assert.ok(typeof result === 'string');

From 347f7466ce44e78934da4237d4e0a57324c3612a Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 04:25:30 -0700
Subject: [PATCH 18/20] further windows fixes

---
 CHANGELOG.md                 | 6 +++++-
 src/utils/commandExecutor.ts | 2 ++
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 4680616..9cf463a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,6 +1,10 @@
 # Changelog
 
-## [Unreleased]
+## [1.1.5]
+- windows compatability
+
+## [1.1.4]
+- skipped version
 
 ## [1.1.3]
 - "gemini reads, claude edits"
diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index fcd885e..c026fdf 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -25,6 +25,7 @@ export async function executeCommand(
       childProcess = spawn(command, args, {
         env: process.env,
         shell: isWindows,
+        windowsHide: isWindows,
         stdio: ['pipe', 'pipe', 'pipe'],
       }) as ChildProcessByStdio<Writable, Readable, Readable>;
 
@@ -36,6 +37,7 @@ export async function executeCommand(
       childProcess = spawn(command, args, {
         env: process.env,
         shell: isWindows,
+        windowsHide: isWindows,
         stdio: ['ignore', 'pipe', 'pipe'],
       }) as ChildProcessByStdio<null, Readable, Readable>;
     }

From e919d446e8a57b00e95aeb80226deb4034f7ddc8 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 04:30:04 -0700
Subject: [PATCH 19/20] Clarify risk mitigation for shell on non-windows

---
 CHANGELOG.md                 | 2 +-
 src/utils/commandExecutor.ts | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 9cf463a..bac14d6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,7 +4,7 @@
 - windows compatability
 
 ## [1.1.4]
-- skipped version
+- skipped
 
 ## [1.1.3]
 - "gemini reads, claude edits"
diff --git a/src/utils/commandExecutor.ts b/src/utils/commandExecutor.ts
index c026fdf..91a439b 100644
--- a/src/utils/commandExecutor.ts
+++ b/src/utils/commandExecutor.ts
@@ -18,7 +18,7 @@ export async function executeCommand(
     let isResolved = false;
     let lastReportedLength = 0;
     
-    // Only use shell on Windows to avoid injection risks on Unix-like systems
+    // shell only on Windows to mitigate the shell risk for Non-Windows platforms.
     const isWindows = process.platform === 'win32';
 
     if (stdinData) {

From 8a3d415b75414008da0ee8c49650908531c3d257 Mon Sep 17 00:00:00 2001
From: jamubc <150970140+jamubc@users.noreply.github.com>
Date: Mon, 11 Aug 2025 11:40:02 +0000
Subject: [PATCH 20/20] Update CHANGELOG.md

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
---
 CHANGELOG.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index bac14d6..2c0f7a5 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,7 +1,7 @@
 # Changelog
 
 ## [1.1.5]
-- windows compatability
+- windows compatibility
 
 ## [1.1.4]
 - skipped