Skip to content

Commit daf9d35

Browse files
mzouinkmzouink
committed
update
1 parent 16579ab commit daf9d35

File tree

6 files changed

+63
-42
lines changed

6 files changed

+63
-42
lines changed

‎data/processed/auto_generated_overview.csv‎

Lines changed: 33 additions & 33 deletions
Original file line numberDiff line numberDiff line change
@@ -1,25 +1,25 @@
11
Group,Setup,Target,Model Type,Starting Checkpoint,Max Iterations,Resolution (nm),Batch Size,Learning Rate,Creation Date,Still Running,LSD,Trained Until
2-
exp_cell,setup_20,cell,isolated_unet,config_2/278361,100000,8,14,5e-05,2025-09-29,YES,YES,2025-09-29
3-
exp_cell,setup_21,cell,fly model,config_2/278361,50000,16,10,5e-05,2025-09-28,YES,YES,2025-09-28
4-
exp_cell,setup_22,cell,fly model,config_2/278361,50000,32,10,5e-05,2025-09-28,YES,YES,2025-09-28
5-
exp_cell,setup_23,cell,fly model,config_2/278361,50000,64,10,5e-05,2025-09-28,YES,YES,2025-09-28
6-
exp_cell,setup_24,cell,fly model,config_2/278361,50000,128,10,5e-05,2025-09-28,YES,YES,2025-09-28
7-
exp_cell,setup_33,cell,fly model,run07/432000k,10000,8,14,5e-06,2025-09-29,YES,YES,2025-09-29
8-
exp_cerebellum,setup_0,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,510000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
9-
exp_cerebellum,setup_1,mito,fly model,20250725_mito_all_mixed_distance_16nm/80000k,500000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
10-
exp_cerebellum,setup_11,nuc,fly model,20250725_nuc_all_mixed_distance_32nm/80000k,480000,32,14,5e-06,2025-09-23,YES,NO,2025-09-23
11-
exp_cerebellum,setup_2,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,500000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
12-
exp_cerebellum,setup_3,mito,fly model,20250725_mito_all_mixed_distance_16nm/80000k,500000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
13-
exp_cerebellum,setup_4,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,500000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
14-
exp_cerebellum,setup_5,mito,fly model,20250725_mito_all_mixed_distance_16nm/80000k,500000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
15-
exp_cerebellum,setup_6,nuc,fly model,20250725_nuc_all_mixed_distance_32nm/80000k,490000,32,14,5e-06,2025-09-23,YES,NO,2025-09-23
16-
exp_pancreas,setup_07,mito,fly model,20250806_mito_mouse_distance_16nm/362000k,490000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
17-
exp_pancreas,setup_08,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,490000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
18-
exp_pancreas,setup_09,nuc,fly model,20250806_nuc_mouse_distance_32nm/342000k,500000,32,14,5e-06,2025-09-23,YES,NO,2025-09-23
19-
exp_pancreas,setup_10,nuc,fly model,20250806_nuc_mouse_distance_32nm/342000k,490000,32,14,5e-06,2025-09-23,YES,NO,2025-09-23
20-
exp_pancreas,setup_12,isg+ld+lyso+mito,fly model,20250711_isg_ld_all_1/244000k,420000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
21-
exp_pancreas,setup_13,isg,fly model,20250711_isg_ld_all_1/244000k,430000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
22-
exp_pancreas,setup_14,isg+ld+lyso,fly model,20250711_isg_ld_all_1/244000k,420000,16,14,5e-06,2025-09-23,YES,NO,2025-09-23
2+
exp_cell,setup_20,cell,isolated_unet,config_2/278361,120000,8,14,5e-05,2025-10-01,YES,YES,2025-10-01
3+
exp_cell,setup_21,cell,fly model,config_2/278361,60000,16,10,5e-05,2025-09-30,YES,YES,2025-09-30
4+
exp_cell,setup_22,cell,fly model,config_2/278361,60000,32,10,5e-05,2025-09-30,YES,YES,2025-09-30
5+
exp_cell,setup_23,cell,fly model,config_2/278361,60000,64,10,5e-05,2025-09-30,YES,YES,2025-09-30
6+
exp_cell,setup_24,cell,fly model,config_2/278361,60000,128,10,5e-05,2025-09-30,YES,YES,2025-09-30
7+
exp_cell,setup_33,cell,fly model,run07/432000k,60000,8,14,5e-06,2025-10-01,YES,YES,2025-10-01
8+
exp_cerebellum,setup_0,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,510000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
9+
exp_cerebellum,setup_1,mito,fly model,20250725_mito_all_mixed_distance_16nm/80000k,500000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
10+
exp_cerebellum,setup_11,nuc,fly model,20250725_nuc_all_mixed_distance_32nm/80000k,480000,32,14,5e-06,2025-09-23,NO,NO,2025-09-23
11+
exp_cerebellum,setup_2,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,500000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
12+
exp_cerebellum,setup_3,mito,fly model,20250725_mito_all_mixed_distance_16nm/80000k,500000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
13+
exp_cerebellum,setup_4,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,500000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
14+
exp_cerebellum,setup_5,mito,fly model,20250725_mito_all_mixed_distance_16nm/80000k,500000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
15+
exp_cerebellum,setup_6,nuc,fly model,20250725_nuc_all_mixed_distance_32nm/80000k,490000,32,14,5e-06,2025-09-23,NO,NO,2025-09-23
16+
exp_pancreas,setup_07,mito,fly model,20250806_mito_mouse_distance_16nm/362000k,490000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
17+
exp_pancreas,setup_08,mito,fly model,20250725_mito_all_mixed_distance_16nm/568000k,490000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
18+
exp_pancreas,setup_09,nuc,fly model,20250806_nuc_mouse_distance_32nm/342000k,500000,32,14,5e-06,2025-09-23,NO,NO,2025-09-23
19+
exp_pancreas,setup_10,nuc,fly model,20250806_nuc_mouse_distance_32nm/342000k,490000,32,14,5e-06,2025-09-23,NO,NO,2025-09-23
20+
exp_pancreas,setup_12,isg+ld+lyso+mito,fly model,20250711_isg_ld_all_1/244000k,420000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
21+
exp_pancreas,setup_13,isg,fly model,20250711_isg_ld_all_1/244000k,430000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
22+
exp_pancreas,setup_14,isg+ld+lyso,fly model,20250711_isg_ld_all_1/244000k,420000,16,14,5e-06,2025-09-23,NO,NO,2025-09-23
2323
exp_c-elegen_v3,20250725_cell_all_distance_32nm,cell,fly model,run08/438000k,76000,,,,2025-07-25,NO,NO,2025-08-06
2424
exp_c-elegen_v3,20250725_cell_all_mixed_distance_32nm,cell,fly model,run08/438000k,298000,,,,2025-07-25,NO,NO,2025-08-13
2525
exp_c-elegen_v3,20250725_ecs_all_distance_16nm,ecs,fly model,run08/438000k,398000,,,,2025-07-25,NO,NO,2025-08-13
@@ -48,15 +48,15 @@ exp_c-elegen_v3,20250806_nuc_mouse_distance_64nm,nuc,fly model,run08/438000k,346
4848
exp_c-elegen_v3,20250806_perox_all_mixed_distance_16nm,er,fly model,run08/438000k,350000,,,,2025-08-06,NO,NO,2025-08-22
4949
exp_c-elegen_v3,20250806_perox_mouse_distance_16nm,er,fly model,run08/438000k,354000,,,,2025-08-06,NO,NO,2025-08-22
5050
exp_c-elegen_v3,20250806_perox_mouse_lsd_16nm,er,fly model,run08/438000k,306000,,,,2025-08-06,NO,YES,2025-08-22
51-
exp_c-elegen_v4,setup_25,mito+nuc+lyso+ld+yolk+perox,fly model,run07/432000k,160000,8,14,5e-06,2025-09-29,YES,NO,2025-09-29
52-
exp_c-elegen_v4,setup_26,mito+nuc+lyso+ld+yolk+perox,fly model,run07/432000k,180000,16,14,5e-06,2025-09-29,YES,NO,2025-09-29
53-
exp_c-elegen_v4,setup_27,mito+nuc+lyso+ld+yolk,fly model,run07/432000k,160000,8,14,5e-06,2025-09-29,YES,NO,2025-09-29
54-
exp_c-elegen_v4,setup_28,mito+nuc+lyso+ld+yolk,fly model,run07/432000k,160000,16,14,5e-06,2025-09-29,YES,NO,2025-09-29
55-
exp_c-elegen_v4,setup_29,er,fly model,all/540000k,180000,8,14,5e-06,2025-09-29,YES,NO,2025-09-29
56-
exp_c-elegen_v4,setup_31,ecs,fly model,all/540000k,190000,8,14,5e-06,2025-09-29,YES,NO,2025-09-29
57-
exp_c-elegen_v4,setup_32,ecs,fly model,all/540000k,190000,16,14,5e-06,2025-09-29,YES,NO,2025-09-29
58-
exp_mito,setup_15,mito,fly model,20250806_mito_mouse_distance_16nm/362000k,420000,16,14,5e-05,2025-09-29,YES,YES,2025-09-29
59-
exp_mito,setup_16,mito,fly model,setup_15/80000k,330000,16,14,5e-05,2025-09-29,YES,YES,2025-09-29
60-
exp_mito,setup_17,mito,fly model,setup_16/30000k,280000,32,14,5e-05,2025-09-29,YES,YES,2025-09-29
61-
exp_mito,setup_18,mito,fly model,20250725_mito_all_mixed_distance_16nm/372000k,220000,32,14,5e-05,2025-09-29,YES,YES,2025-09-29
62-
exp_mito,setup_19,mito,fly model,20250725_mito_all_mixed_distance_16nm/372000k,310000,16,14,5e-05,2025-09-29,YES,YES,2025-09-29
51+
exp_c-elegen_v4,setup_25,mito+nuc+lyso+ld+yolk+perox,fly model,run07/432000k,210000,8,14,5e-06,2025-10-01,YES,NO,2025-10-01
52+
exp_c-elegen_v4,setup_26,mito+nuc+lyso+ld+yolk+perox,fly model,run07/432000k,230000,16,14,5e-06,2025-10-01,YES,NO,2025-10-01
53+
exp_c-elegen_v4,setup_27,mito+nuc+lyso+ld+yolk,fly model,run07/432000k,210000,8,14,5e-06,2025-10-01,YES,NO,2025-10-01
54+
exp_c-elegen_v4,setup_28,mito+nuc+lyso+ld+yolk,fly model,run07/432000k,210000,16,14,5e-06,2025-10-01,YES,NO,2025-10-01
55+
exp_c-elegen_v4,setup_29,er,fly model,all/540000k,240000,8,14,5e-06,2025-10-01,YES,NO,2025-10-01
56+
exp_c-elegen_v4,setup_31,ecs,fly model,all/540000k,250000,8,14,5e-06,2025-10-01,YES,NO,2025-10-01
57+
exp_c-elegen_v4,setup_32,ecs,fly model,all/540000k,250000,16,14,5e-06,2025-10-01,YES,NO,2025-10-01
58+
exp_mito,setup_15,mito,fly model,20250806_mito_mouse_distance_16nm/362000k,460000,16,14,5e-05,2025-10-01,YES,YES,2025-10-01
59+
exp_mito,setup_16,mito,fly model,setup_15/80000k,370000,16,14,5e-05,2025-10-01,YES,YES,2025-10-01
60+
exp_mito,setup_17,mito,fly model,setup_16/30000k,310000,32,14,5e-05,2025-10-01,YES,YES,2025-10-01
61+
exp_mito,setup_18,mito,fly model,20250725_mito_all_mixed_distance_16nm/372000k,250000,32,14,5e-05,2025-10-01,YES,YES,2025-10-01
62+
exp_mito,setup_19,mito,fly model,20250725_mito_all_mixed_distance_16nm/372000k,350000,16,14,5e-05,2025-10-01,YES,YES,2025-10-01

‎logs/daily_update.log‎

Lines changed: 15 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -582,3 +582,18 @@ Files: output/visualizations/index.html, experiment_timeline.html, experiment_ga
582582
Open viz: open output/visualizations/index.html
583583
[2025-09-29 18:27:42] run.sh completed successfully
584584
[2025-09-29 18:27:42] Adding changes to git...
585+
[2025-09-29 18:27:42] Committing changes...
586+
[2025-09-29 18:27:42] Pushing to repository...
587+
To https://github.com/janelia-cellmap/exp-overview.git
588+
e37a253..3a678ee main -> main
589+
[2025-09-29 18:27:42] Successfully pushed changes to repository
590+
[2025-09-29 18:27:42] Daily update process completed successfully
591+
[2025-09-30 02:00:01] Starting daily update process...
592+
[2025-09-30 02:00:01] Activated conda environment: fly
593+
[2025-09-30 02:00:01] Running run.sh...
594+
🔬 Experiment Overview Generator
595+
===============================
596+
📦 Activating conda environment...
597+
./run.sh: line 11: conda: command not found
598+
./run.sh: line 12: conda: command not found
599+
[2025-09-30 02:00:01] ERROR: run.sh failed with exit code 1

‎output/visualizations/experiment_gantt.html‎

Lines changed: 1 addition & 1 deletion
Large diffs are not rendered by default.

0 commit comments

Comments
 (0)