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Catalog details about channel labels and names and make it public in a CSV format #164

@shntnu

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@shntnu

⚠️ ⚠️ This was derived from https://github.com/jump-cellpainting/datasets-private/issues/21 but someone should verify that I translated it correctly ⚠️ ⚠️

source channel_1 channel_2 channel_3 channel_4 channel_5 brightfield_channels
1 Mito AGP RNA ER DNA BF
2 DNA ER RNA AGP Mito BF, BF Low, BF High
3 Mito AGP RNA ER DNA BF, BF Low, BF High
4 Mito AGP RNA ER DNA BF, BF Low, BF High
5 DNA ER RNA AGP Mito BF, BF Low, BF High
6 DNA ER RNA AGP Mito BF, BF Low, BF High
7,13 Mito AGP RNA ER DNA None
8 Mito Phalloidin WGA/Syto-14 ER DNA None
9 ER Mito AGP DNA RNA None
10 DNA ER RNA AGP Mito BF, BF Low, BF High
11 DNA ER AGP RNA Mito BF High
15 Con A/SYTO-14 DNA AGP Mito BF, BF Low, BF High

Notes:

  • Source 8 used a different staining protocol: Phalloidin alone and combined WGA/Syto-14
  • Source 15 had only 4 fluorescence channels with combined Con A/SYTO-14 staining

Channel Abbreviations:

  • Mito: MitoTracker
  • DNA: Hoechst
  • ER: Con A (Concanavalin A)
  • RNA: Syto-14
  • AGP: Phalloidin/WGA

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