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⚠️ ⚠️ This was derived from https://github.com/jump-cellpainting/datasets-private/issues/21 but someone should verify that I translated it correctly ⚠️ ⚠️
source | channel_1 | channel_2 | channel_3 | channel_4 | channel_5 | brightfield_channels |
---|---|---|---|---|---|---|
1 | Mito | AGP | RNA | ER | DNA | BF |
2 | DNA | ER | RNA | AGP | Mito | BF, BF Low, BF High |
3 | Mito | AGP | RNA | ER | DNA | BF, BF Low, BF High |
4 | Mito | AGP | RNA | ER | DNA | BF, BF Low, BF High |
5 | DNA | ER | RNA | AGP | Mito | BF, BF Low, BF High |
6 | DNA | ER | RNA | AGP | Mito | BF, BF Low, BF High |
7,13 | Mito | AGP | RNA | ER | DNA | None |
8 | Mito | Phalloidin | WGA/Syto-14 | ER | DNA | None |
9 | ER | Mito | AGP | DNA | RNA | None |
10 | DNA | ER | RNA | AGP | Mito | BF, BF Low, BF High |
11 | DNA | ER | AGP | RNA | Mito | BF High |
15 | Con A/SYTO-14 | DNA | AGP | Mito | BF, BF Low, BF High |
Notes:
- Source 8 used a different staining protocol: Phalloidin alone and combined WGA/Syto-14
- Source 15 had only 4 fluorescence channels with combined Con A/SYTO-14 staining
Channel Abbreviations:
- Mito: MitoTracker
- DNA: Hoechst
- ER: Con A (Concanavalin A)
- RNA: Syto-14
- AGP: Phalloidin/WGA