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Cleanup cellpainting-gallery-dev by curating jump further and deciding what to do with cpg0007-prism #165

@shntnu

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@shntnu

As of Feb 2025, the dev bucket has two top-level prefixes:

cpg0007-prism - email thread "Fwd: PRISM compounds in Cell Painting" will decide what to do here

jump - contains metadata, load data, profiles generated by partners. The metadata may still be useful but the remaining can almost certainly be deleted. The only exception is source_15 which contains both plates that were uploaded to the production bucket, as well as those that were not because we the metadata about them was never recovered (so they were "useless")

Image

In specific, see this comment:

#146 (comment)

Many plates did not have backend, only images (n=89); these were dropped <....> They images have not been deleted from the dev bucket but we will likely delete them in the future unless we learn more about them in the future

Older notes

There are two sets of images

Screenshot 2024-07-23 at 11 41 08 AM

The plate in the bleaching set can be deleted.

From https://www.nature.com/articles/s41592-024-02241-6#Sec6:

we imaged four replicate plates of the A549 24 h compound plate six additional times to test for photobleaching from repeated imaging;

The unbleached one is here

Screenshot 2024-07-23 at 11 41 47 AM

The 6 bleached versions of it are here

Screenshot 2024-07-23 at 11 42 12 AM

The upside down one can also be deleted

We use only the corrected one:

https://github.com/search?q=repo%3Ajump-cellpainting%2F2024_Chandrasekaran_NatureMethods%20BR00118043&type=code

I have now deleted both

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