JUMP-CP Datasets v0.13

What's Changed

• feat: Add SQLite export script and documentation by @shntnu in #166

Full Changelog: v0.12...v0.13

JUMP-CP Datasets v0.12

What's Changed

• feat: Add DuckDB database schema for JUMP metadata by @shntnu in #158

Full Changelog: v0.11.1...v0.12

JUMP-CP Datasets v0.11.1

What's Changed

• fix: jq quotes + avoid xargs (args too long) to make script portable by @shntnu in #156

Full Changelog: v0.11.0...v0.11.1

JUMP-CP Datasets v0.11.0

What's Changed

⚠️ This is a breaking change! Assembled profiles in the Cell Painting Gallery have been moved to obey a new folder structure ⚠️

• feat: Update profile URLs to use new profiles_assembled structure + move S3 objects to obey new folder structure by @shntnu in #155

Full Changelog: v0.10.0...v0.11.0

JUMP-CP Datasets v0.10.0

What's Changed

We switched over to using profile_index.json instead of profile_index.csv

• chore: Replace profile index file format (csv->json) by @afermg in #152
• fix(upload_index.sh): replace csv->json by @afermg in #153
• fix(upload_index.sh): upload parser one-liner by @afermg in #154

Full Changelog: v0.9.0...v0.10.0

JUMP-CP Datasets v0.9.0

What's Changed

• Add source_15 by @shntnu @bethac07 in #146

Full Changelog: v0.8.0...v0.9.0

JUMP-CP Datasets v0.8.0

What's Changed

Major

• All documentation moved to JUMP Hub! by @shntnu @afermg in #138
• Update profile_index.csv with integrated profiles by @johnarevalo in #127
• Make zenodo scripts reusable by @afermg in #129
• Add smiles again by @afermg in #125
• Add pixel sizes to the metadata by @bethac07 in #140

Minor

• ci: change zenodo root id, fix hash check. by @afermg in #128
• Rename plate EC000157real -> EC000157real by @shntnu in #134
• source_11 Batch4 doesn't have BF by @ErinWeisbart in #136

Full Changelog: v0.7.1...v0.8.0

JUMP-CP Datasets v0.7.1

• Updated entry title

JUMP-CP Datasets v0.7.0

What's Changed

• Auto versioning by @afermg in #121
• Updated notes on the data @shntnu in #120

Full Changelog: v0.6.0...v0.7.0

JUMP-CP Datasets v0.6.0

What's Changed

• Produced batch-corrected profiles for all 3 modalities (compound, CRISPR, ORF) by @johnarevalo @Zitong-Chen-16 using https://github.com/broadinstitute/jump-profiling-recipe/releases/tag/v0.1.0. The URLs to the profiles are here.
• Created JUMP tutorial @afermg in #107
• Added SMILES to compounds.csv.gz by @srijitseal in #103
• Created Spring portal by https://github.com/spring-discovery in #54
• Added Terra-specific files + use anonymous flag when reading images from S3 by @deflaux in #55
• Specified CellProfiler versions @bethac07 in #31
• Reported stats on number and size of images files by @shntnu in #43
• Specified which compounds were nominated by which source by @shntnu in #106

Full Changelog: v0.5.0...v0.6.0