Bump the pip group across 1 directory with 11 updates

Bumps the pip group with 11 updates in the /src directory:

| Package | From | To |
| --- | --- | --- |
| [coverage](https://github.com/nedbat/coveragepy) | `7.6.12` | `7.7.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.4` | `8.3.5` |
| [ruff](https://github.com/astral-sh/ruff) | `0.9.9` | `0.11.0` |
| [cryptography](https://github.com/pyca/cryptography) | `44.0.1` | `44.0.2` |
| [numpy](https://github.com/numpy/numpy) | `2.2.3` | `2.2.4` |
| [plotly](https://github.com/plotly/plotly.py) | `5.24.1` | `6.0.1` |
| [pycurl](https://github.com/pycurl/pycurl) | `7.45.4` | `7.45.6` |
| [setuptools](https://github.com/pypa/setuptools) | `75.8.2` | `76.0.0` |
| [ipython](https://github.com/ipython/ipython) | `8.33.0` | `9.0.2` |
| [jinja2](https://github.com/pallets/jinja) | `3.1.5` | `3.1.6` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.11.1` | `4.11.2` |



Updates `coverage` from 7.6.12 to 7.7.0
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.6.12...7.7.0)

Updates `pytest` from 8.3.4 to 8.3.5
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.4...8.3.5)

Updates `ruff` from 0.9.9 to 0.11.0
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.9.9...0.11.0)

Updates `cryptography` from 44.0.1 to 44.0.2
- [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst)
- [Commits](pyca/cryptography@44.0.1...44.0.2)

Updates `numpy` from 2.2.3 to 2.2.4
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.2.3...v2.2.4)

Updates `plotly` from 5.24.1 to 6.0.1
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v5.24.1...v6.0.1)

Updates `pycurl` from 7.45.4 to 7.45.6
- [Changelog](https://github.com/pycurl/pycurl/blob/master/ChangeLog)
- [Commits](https://github.com/pycurl/pycurl/commits)

Updates `setuptools` from 75.8.2 to 76.0.0
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v75.8.2...v76.0.0)

Updates `ipython` from 8.33.0 to 9.0.2
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@8.33.0...9.0.2)

Updates `jinja2` from 3.1.5 to 3.1.6
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](pallets/jinja@3.1.5...3.1.6)

Updates `pymongo` from 4.11.1 to 4.11.2
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.11.1...4.11.2)

---
updated-dependencies:
- dependency-name: coverage
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip
- dependency-name: cryptography
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: plotly
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pip
- dependency-name: pycurl
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: setuptools
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pip
- dependency-name: ipython
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pip
- dependency-name: jinja2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
- dependency-name: pymongo
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip
...

Signed-off-by: dependabot[bot] <support@github.com>

Author: dependabot[bot]

src/requirements-dev.txt

@@ -1,7 +1,7 @@
-coverage==7.6.12
-pytest==8.3.4
+coverage==7.7.0
+pytest==8.3.5
 pytest-cov==6.0.0
 pytest-recording==0.13.2
 requests-mock==1.12.1
-ruff==0.9.9
+ruff==0.11.0
 vcrpy==7.0.0

src/requirements.txt

@@ -5,7 +5,7 @@ bokeh==3.6.2
 certifi==2025.1.31
 chardet==5.2.0
 chart_studio==1.1.0
-cryptography==44.0.1
+cryptography==44.0.2
 decorator==5.2.1
 ete3==3.1.3
 html5lib==1.1
@@ -15,13 +15,13 @@ markdown==3.7
 markupsafe==3.0.2
 ndg-httpsclient==0.5.1
 networkx==3.4.2
-numpy==2.2.3
+numpy==2.2.4
 pexpect==4.9.0
 pickleshare==0.7.5
 pillow==11.1.0
-plotly==5.24.1
+plotly==6.0.1
 pyasn1==0.6.1
-pycurl==7.45.4
+pycurl==7.45.6
 pygments==2.19.1
 pyopenssl==25.0.0
 python-daemon==3.1.2
@@ -30,21 +30,21 @@ qgrid==1.3.1
 rsa==4.9
 scipy==1.15.2
 seaborn==0.13.2
-setuptools==75.8.2
+setuptools==76.0.0
 six==1.17.0
 sympy==1.13.3
 terminado==0.18.1
 wordcloud==1.9.4
 
 # Narrative/Jupyter requirements
 clustergrammer2==0.18.0
-ipython==8.33.0
+ipython==9.0.2
 ipywidgets==8.1.5
-jinja2==3.1.5
+jinja2==3.1.6
 # N.b. notebook version must stay under 7
 notebook==6.5.7
 pandas==2.2.3
-pymongo==4.11.1
+pymongo==4.11.2
 pyyaml==6.0.2
 requests==2.32.3
 scikit-learn==1.6.1