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@briehl briehl released this 28 Mar 05:19
· 23 commits to main since this release
v5.4.3
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Version 5.4.3

URO-363 - add note to the sharing panel to contact KBase about DOIs

  • Python requirements-general.txt and requirements.txt merged into a single file so that all runtime deps are installed in one place.

  • Python dependencies updated to the following versions:

    • coverage: 7.6.12
    • pytest: 8.3.4
    • pytest-cov: 6.0.0
    • ruff: 0.9.9
    • vcrpy: 7.0.0
    • beautifulsoup4: 4.13.3
    • biopython: 1.85
    • bokeh: 3.6.2
    • certifi: 2025.1.31
    • cryptography: 44.0.1
    • decorator: 5.2.1
    • idna: 3.10
    • markupsafe: 3.0.2
    • networkx: 3.4.2
    • numpy: 2.2.3
    • pillow: 11.1.0
    • plotly: 5.24.1
    • pyasn1: 0.6.1
    • pycurl: 7.45.4
    • pygments: 2.19.1
    • pyopenssl: 25.0.0
    • python-daemon: 3.1.2
    • scipy: 1.15.2
    • setuptools: 75.8.2
    • six: 1.17.0
    • sympy: 1.13.3
    • wordcloud: 1.9.4
    • ipython: 8.33.0
    • jinja2: 3.1.5
    • pandas: 2.2.3
    • pymongo: 4.11.1
    • scikit-learn: 1.6.1
    • statsmodels: 0.14.4
    • tornado: 6.4.2

  • Javascript dependency updates

    • dompurify 3.1.6 -> 3.2.4
    • plotly.js-dist-min 2.35.0 -> 2.35.3 (note: next is 3.0.1, with breaking changes)
    • @babel/traverse 7.25.6 -> 7.26.9
    • @eslint/eslintrc 3.1.0 -> 3.3.0
    • @eslint/js 9.11.1 -> 9.21.0
    • @wdio/browserstack-service 9.0.9 -> 9.10.1
    • @wdio/cli 9.0.9 -> 9.10.1
    • @wdio/local-runner 9.0.9 -> 9.10.1
    • @wdio/mocha-framework 9.0.8 -> 9.10.1
    • @wdio/spec-reporter 9.0.8 -> 9.10.1
    • axios 1.7.7 -> 1.8.1
    • chromedriver 128.0.3 -> 133.0.3
    • commander 12.1.0 -> 13.1.0
    • eslint 9.11.1 -> 9.21.0
    • eslint-config-prettier 9.1.0 -> 10.0.2
    • expect-webdriverio 5.0.2 -> 5.0.5
    • glob 11.0.0 -> 11.0.1
    • globals 15.9.0 -> 16.0.0
    • husky 9.1.6 -> 9.1.7
    • jasmine-core 5.3.0 -> 5.6.0
    • jquery-ui 1.14.0 -> 1.14.1
    • lint-staged 15.2.10 -> 15.4.3
    • postcss 8.4.47 -> 8.5.3
    • prettier 3.3.3 -> 3.5.2
    • puppeteer 23.4.0 -> 24.3.0
    • sass 1.79.3 -> 1.85.1
    • selenium-standalone 10.0.0 -> 10.0.1
    • selenium-webdriver 4.25.0 -> 4.29.0
    • string.prototype.startswith 1.0.0 -> 1.0.1
    • stylelint 16.9.0 -> 16.15.0
    • stylelint-config-recommended 14.0.1 -> 15.0.0
    • stylelint-config-standard 36.0.1 -> 37.0.0
    • terser 5.33.0 -> 5.39.0
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