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Simon Gravelle
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updated density figure
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docs/sphinx/source/tutorial3/figures/water.ipynb

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docs/sphinx/source/tutorial3/tutorial.rst

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@@ -300,10 +300,15 @@ the position :math:`(0, 0, 0)`:
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fix myrct PEG recenter 0 0 0 shift all
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Note that the ``recenter`` command has no impact on the dynamics,
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it simply repositions the frame of reference so that any drift of the
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system is ignored, which can be convenient for visualizing and analyzing
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the system.
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.. admonition:: Note
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:class: non-title-info
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Note that the ``recenter`` command has no impact on the dynamics,
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it simply repositions the frame of reference so that any drift of the
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system is ignored, which can be convenient for visualizing and analyzing
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the system. However, be aware that using ``fix recenter`` can sometimes
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mask underlying issues in the simulation, such as net momentum or the so-called
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*flying ice cube syndrome* :cite:`wong2016good`.
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Let us create images of the systems:
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