continu to apply comments livecoms

Author: simongravelle

docs/sphinx/source/tutorial4/tutorial.rst

@@ -44,7 +44,7 @@ of ``lj/cut/tip4p/long`` instead of ``lj/cut/coul/long``, and ``pppm/tip4p``
 instead of ``pppm``.  When using ``lj/cut/tip4p/long`` and ``pppm/tip4p``,
 the interactions resemble the conventional Lennard-Jones and Coulomb interactions,
 except that they are specifically designed for the four-point water model.  As a result,
-LAMMPS automatically creates a four-point water molecule, assigning type O
+LAMMPS automatically adds the fourth point to the water molecules, assigning type O
 atoms as oxygen and type H atoms as hydrogen.  The fourth massless atom (M) of the
 TIP4P water molecule does not have to be defined explicitly, and the value of
 :math:`0.1546\,\text{Å}` corresponds to the O-M distance of the
@@ -510,8 +510,8 @@ commands to **shearing.lmp**:
     velocity walltop set 2e-4 NULL NULL
 
 The ``setforce`` commands cancel the forces on ``walltop`` and
-``wallbot``.  As a result, the atoms in these two groups will not
-experience any forces from the rest of the system.  Consequently, in the absence of
+``wallbot`` in the :math:`x` direction.  As a result, the atoms in these two groups will not
+experience any forces along :math:`x` from the rest of the system.  Consequently, in the absence of
 external forces, these atoms will conserve the initial velocities imposed by the
 two ``velocity`` commands.
 

docs/sphinx/source/tutorial6/tutorial.rst

@@ -218,7 +218,7 @@ classical textbooks like Ref. :cite:`frenkel2023understanding`.
 Using hydrid potentials
 -----------------------
 
-The first particularly of our system is that it combines water and
+The first peculiarity of our system is that it combines water and
 silica, which necessitates the use of two force fields: Vashishta (for
 :math:`\text{SiO}_2`), and TIP4P (for water).  Here, the TIP4P/2005 model is
 employed for the water :cite:`abascal2005general`.

docs/sphinx/source/tutorial7/tutorial.rst

@@ -372,15 +372,15 @@ central part of the box.
     Add FIGURE US-system-biased Snapshot of the system simulated during the umbrella sampling
     step of \hyperref[umbrella-sampling-label]{Tutorial 7}, showing type-1 atoms
     in cyan and the type-2 atom in red.  Only the type-2 atom explores the central part of the box,
-    ``mymes``, due to the additional biasing potential :math:`V`. Parmaeters are
+    ``mymes``, due to the additional biasing potential :math:`V`. Parameters are
     :math:`U_0 = 2.38~\text{kcal/mol}`, :math:`\delta = 1.0~\text{Å}`, and :math:`x_0 = 10~\text{Å}`.
 
 Now, we create a loop with 15 steps and progressively move the center of the
 bias potential by increments of 0.4 nm.  Add the following lines to **umbrella-sampling.lmp**:
 
 .. code-block:: lammps
 
-    variable a loop 25
+    variable a loop 15
     label loop
 
     variable xdes equal 4*${a}-32

docs/sphinx/source/tutorial8/figures/REACT-mixing-dm.png

@@ -122,7 +122,7 @@ For visualization purposes, the atoms from the CNT ``group`` is moved
 to the center of the box using ``fix recenter``.
 As the time progresses, the system density,
 :math:`\rho`, gradually converges toward the target value
-of :math:`0.8`\,g/cm:math:`^3`.
+of :math:`0.9`\,g/cm:math:`^3`.
 Meanwhile, the total energy of the system initially evolves rapidly, reflecting the
 densification process, and then eventually stabilizes.