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Update GHA for bioc 3.20
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.github/workflows/check-bioc.yml

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@@ -52,9 +52,9 @@ jobs:
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fail-fast: false
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matrix:
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config:
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- { os: ubuntu-latest, r: '4.3', bioc: '3.17', cont: "bioconductor/bioconductor_docker:RELEASE_3_17", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" }
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- { os: macOS-latest, r: '4.3', bioc: '3.17'}
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- { os: windows-latest, r: '4.3', bioc: '3.17'}
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- { os: ubuntu-latest, r: '4.4', bioc: '3.20', cont: "bioconductor/bioconductor_docker:RELEASE_3_20", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" }
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- { os: macOS-latest, r: '4.4', bioc: '3.20'}
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- { os: windows-latest, r: '4.4', bioc: '3.20'}
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## Check https://github.com/r-lib/actions/tree/master/examples
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## for examples using the http-user-agent
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env:
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uses: actions/cache@v3
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_17-r-4.3-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_17-r-4.3-
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key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_20-r-4.4-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_20-r-4.4-
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- name: Cache R packages on Linux
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if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' "
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uses: actions/cache@v3
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with:
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path: /home/runner/work/_temp/Library
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key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_17-r-4.3-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_17-r-4.3-
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key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_20-r-4.4-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_20-r-4.4-
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# - name: Install Linux system dependencies
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# if: runner.os == 'Linux'
@@ -285,7 +285,7 @@ jobs:
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if: failure()
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uses: actions/upload-artifact@master
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with:
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name: ${{ runner.os }}-biocversion-RELEASE_3_17-r-4.3-results
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name: ${{ runner.os }}-biocversion-RELEASE_3_20-r-4.4-results
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path: check
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