Skip to content

Commit 800917d

Browse files
committed
Be a bit more verbose, fix bioccont for latest_release = 'true'
1 parent b8c5d41 commit 800917d

File tree

1 file changed

+5
-1
lines changed

1 file changed

+5
-1
lines changed

.github/workflows/check-bioc.yml

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -57,13 +57,17 @@ jobs:
5757
rversion=$(echo $bioc | grep "r_version_associated_with_release: " | grep -Eo "[0-9]{1}\.[0-9]{1}")
5858
biocmajor=$(echo $biocversion | cut -c 1-1)
5959
biocminor=$(echo $biocversion | cut -c 3-4)
60-
bioccont="bioconductor/bioconductor_docker:RELEASE_${biocmajor}_${biocminor}"
60+
bioccont=$(echo "bioconductor/bioconductor_docker:RELEASE_${biocmajor}_${biocminor}")
6161
else
6262
echo "Finding the latest BioC devel version and the corresponding R version"
6363
biocversion=$(echo $bioc | grep "devel_version: " | grep -Eo "[0-9]{1}\.[0-9]{2}")
6464
rversion=$(echo $bioc | grep "r_version_associated_with_devel: " | grep -Eo "[0-9]{1}\.[0-9]{1}")
6565
bioccont="bioconductor/bioconductor_docker:devel"
6666
fi
67+
echo "Found these settings:"
68+
echo $biocversion
69+
echo $rversion
70+
echo $bioccont
6771
echo "matrix={ \"config\": { [{\"os\" : \"ubuntu-latest\", \"r\" : \"${rversion}\", \"bioc\" : \"${biocversion}\", \"cont\" : \"${bioccont}\"} , {\"os\" : \"macOS-latest\", \"r\" : \"${rversion}\", \"bioc\" : \"${biocversion}\"} , {\"os\" : \"windows-latest\", \"r\" : \"${rversion}\", \"bioc\" : \"${biocversion}\" }] } }"
6872
6973
build-check:

0 commit comments

Comments
 (0)