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"inder" -> "inter" in R code #6

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"inder" -> "inter" in R code #6

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4 changes: 2 additions & 2 deletions SynTracker.R
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ source("add_metadata_fields.R")
# 1. input folder (output folder specified in find_overlapping_regions.sh )
# 2. output folder
# 3.number of cores
# 3. Flag: save RDS/not save RDS ("--intermediate", "--no_indermediate"). If not provided the script fails
# 3. Flag: save RDS/not save RDS ("--intermediate", "--no_intermediate"). If not provided the script fails
# 4. Flag: use set.seed or not for the subsampling of n regions: ("--use.setseed", "--setseed.off"). If not provided the script fails
# 5. metadata: metadata file, should include the sample ID, and any other relevant fields

Expand All @@ -29,7 +29,7 @@ input_directory<-args[1]
output_folder<-args[2]
core_number<-args[3]
save_intermediate_objects<-args[4]
stopifnot(save_intermediate_objects %in% c("--intermediate", "--no_indermediate"))
stopifnot(save_intermediate_objects %in% c("--intermediate", "--no_intermediate"))
set_seed_arg<-args[5]
stopifnot(set_seed_arg %in% c("--use.setseed", "--setseed.off"))
if(length(args)==6) {
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