Merge pull request #389 from ialarmedalien/schemaview_tidy

SchemaView: format, lint autofix, add typing + docs

Author: kevinschaper

linkml_runtime/dumpers/rdflib_dumper.py

@@ -10,8 +10,8 @@
 
 
 from linkml_runtime.dumpers.dumper_root import Dumper
-from linkml_runtime.linkml_model import SlotDefinition
-from linkml_runtime.utils.schemaview import SchemaView, ElementName, PermissibleValue, PermissibleValueText
+from linkml_runtime.linkml_model import ElementName, PermissibleValue, PermissibleValueText, SlotDefinition
+from linkml_runtime.utils.schemaview import SchemaView
 from linkml_runtime.utils.yamlutils import YAMLRoot
 
 logger = logging.getLogger(__name__)

linkml_runtime/index/object_index.py

@@ -13,7 +13,7 @@
 from typing import Any, Union
 from collections.abc import Mapping, Iterator
 
-from linkml_runtime import SchemaView
+from linkml_runtime.utils.schemaview import SchemaView
 from linkml_runtime.utils import eval_utils
 from linkml_runtime.utils.yamlutils import YAMLRoot
 

linkml_runtime/loaders/rdflib_loader.py

@@ -10,11 +10,17 @@
 from rdflib.term import BNode, Literal
 from rdflib.namespace import RDF
 
-from linkml_runtime import MappingError, DataNotFoundError
-from linkml_runtime.linkml_model import ClassDefinitionName, TypeDefinition, EnumDefinition, ClassDefinition
+from linkml_runtime import DataNotFoundError, MappingError
+from linkml_runtime.linkml_model import (
+    ClassDefinition,
+    ClassDefinitionName,
+    EnumDefinition,
+    SlotDefinition,
+    TypeDefinition,
+)
 from linkml_runtime.loaders.loader_root import Loader
 from linkml_runtime.utils.formatutils import underscore
-from linkml_runtime.utils.schemaview import SchemaView, SlotDefinition
+from linkml_runtime.utils.schemaview import SchemaView
 from linkml_runtime.utils.yamlutils import YAMLRoot
 from pydantic import BaseModel
 

linkml_runtime/processing/referencevalidator.py

@@ -19,7 +19,7 @@
 import click
 import yaml
 
-from linkml_runtime import SchemaView
+from linkml_runtime.utils.schemaview import SchemaView
 from linkml_runtime.dumpers import yaml_dumper
 from linkml_runtime.linkml_model import (
     SlotDefinition,

linkml_runtime/utils/inference_utils.py

@@ -4,7 +4,7 @@
 from typing import Union, Optional, Any, Callable
 from jsonasobj2 import JsonObj, items
 
-from linkml_runtime import SchemaView
+from linkml_runtime.utils.schemaview import SchemaView
 from linkml_runtime.linkml_model import SlotDefinitionName, PermissibleValue, ClassDefinitionName
 from linkml_runtime.utils.enumerations import EnumDefinitionImpl
 from linkml_runtime.utils.eval_utils import eval_expr