Skip to content

Pymol crashes on Mac when NRGsuite is installed #9

@jwlampe

Description

@jwlampe

I’ve encountered an issue while installing NRGsuite. I got the suite from the NRGlab website; I’m posting here since their GitHub repository doesn’t have issues enabled, and I’m hoping that you’ll be able to help as a (former?) member of the group.

The details: I attempted the installation on my 2014-era MacBook Pro, running fully updated Big Sur (11.6.5). My pymol is a fresh install via Homebrew. If I attempt to install NRGsuite without python_tk installed, the installation succeeds, but the plugin fails to load, giving the error “No module named '_tkinter’”. After installing python_tk, pymol hangs on exiting, and crashes on attempted restart. Here’s a portion of stderr:

0   CoreFoundation         ...   __exceptionPreprocess + 242
1   libobjc.A.dylib        ...  objc_exception_throw + 48
2   CoreFoundation         ...  -[NSObject(NSObject) __retain_OA] + 0
3   CoreFoundation         ...   ___forwarding___ + 1448
4   CoreFoundation         ...  _CF_forwarding_prep_0 + 120
5   libtk8.6.dylib         ...  etRGBA + 50
6   libtk8.6.dylib         ...  SetCGColorComponents + 124
7   libtk8.6.dylib         ...  TkpGetColor + 543
8   libtk8.6.dylib         ...  Tk_GetColor + 143
... etc...

libc++abi: terminating with uncaught exception of type NSException
Abort trap: 6

I’m wondering if this might be some sort of module version compatibility thing. Anyway, I’m hoping to be able to find a solution. It’d be a shame if folks with somewhat older Macs couldn’t use the programs. I’d be happy to help in any way - more error output, trying solutions, whatever.

Thanks!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions