Skip to content

Version 1.1.0 unstable
Compare
Choose a tag to compare
@lskatz lskatz released this 21 Jun 16:43
· 314 commits to master since this release
v1.1.0
b2f92ef

note: I found a bug in this and am marking it as unstable

  • Informative alignment creation is more transparent
  • Config files under /config; presents under /config
  • sampling sites for --fast is more accurate and correct, for finding the best outgroup
  • Masking for cliffs in bam files for individual genomes
  • Separated Lmono test dataset to clade1 and clade2
  • New Salmonella dataset (thanks Ruth!)
  • Updated installation for Perl modules under make install
  • Simplified names in the MSA directory
  • Streamlining more in the LyveSET.pm perl module, e.g., logmsg() and file extensions
  • moving from using _processMsa to _processVcf script
  • Some better documentation
  • Cleaning mechanism using either CGP or BayesHammer
  • Lots of bug fixing
Assets 2
Loading