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Latest jax 0.7.0 (from July 22nd) has breaking change for current scvi (version 1.3.2)

bugSomething isn't workingSomething isn't working

Status: Open.

#105 In lueckenlab/patpy;

· xlancelottx opened on Jul 28, 2025

Add FACTM to the sample representation methods

enhancementNew feature or requestNew feature or request

Status: Open.

#103 In lueckenlab/patpy;

· VladimirShitov opened on Jul 15, 2025

Add factor filtering for methods with a representation

enhancementNew feature or requestNew feature or request

Status: Open.

#102 In lueckenlab/patpy;

· VladimirShitov opened on Jul 15, 2025

Add patpy to scverse ecosystem

enhancementNew feature or requestNew feature or request

Status: Open.

#97 In lueckenlab/patpy;

· VladimirShitov opened on Jun 4, 2025

Reconsider default parameters for scPoli

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#90 In lueckenlab/patpy;

· VladimirShitov opened on Mar 16, 2025

_move_layer_to_X fails for some datasets

bugSomething isn't workingSomething isn't working

Status: Open.

#86 In lueckenlab/patpy;

· VladimirShitov opened on Feb 9, 2025

Make cell_group_key optional for the methods that don't use it

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#83 In lueckenlab/patpy;

· VladimirShitov opened on Feb 5, 2025

Gather references from the documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#82 In lueckenlab/patpy;

· VladimirShitov opened on Feb 3, 2025

Quality control in representations

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#79 In lueckenlab/patpy;

· VladimirShitov opened on Jan 28, 2025

Incorporate pertpy distance tests

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#78 In lueckenlab/patpy;

· VladimirShitov opened on Jan 28, 2025

Use CLR transform for composition baseline

enhancementNew feature or requestNew feature or request

Status: Open.

#73 In lueckenlab/patpy;

· VladimirShitov opened on Oct 29, 2024

Distance matrix is not always square

bugSomething isn't workingSomething isn't working

Status: Open.

#72 In lueckenlab/patpy;

· mumichae opened on Oct 16, 2024