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Preprocessing Script Overview
Marcus Fedarko edited this page Jan 2, 2018
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MetagenomeScope's "preprocessing script" is a program that takes as input an assembly graph file and produces a SQLite database file that can be visualized in MetagenomeScope's viewer interface.
The code for the preprocessing script is located in the graph_collator/ directory. The script can be run with the command python graph_collator/collate.py.
More detailed information about the execution of the script is located in the Preprocessing Script Settings page.
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