multiplesequencealign/conf/test.config at dev · mirpedrol/multiplesequencealign · GitHub

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/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running minimal tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/multiplesequencealign -profile test,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

process {
    resourceLimits = [
        cpus: 4,
        memory: '15.GB',
        time: '1.h'
    ]
}

params {
    config_profile_name        = 'Test profile'
    config_profile_description = 'Minimal test dataset to check pipeline function'

    skip_stats      = false
    calc_sim        = true
    calc_seq_stats  = true
    extract_plddt   = true
    skip_eval       = false
    calc_sp         = true
    calc_tc         = true
    calc_irmsd      = true
    calc_gaps       = true
    calc_tcs        = true
    build_consensus = true

    // Input data
    input = params.pipelines_testdata_base_path + 'multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv'
    tools = params.pipelines_testdata_base_path + 'multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv'
}