deploy: f54fc7d

Author: adamltyson

_sources/courses/extracellular-analysis.md.txt

@@ -23,14 +23,14 @@ Students should bring their own laptop with Python installed. If you require any
 <a href="mailto:j.ziminski@ucl.ac.uk?subject=SWC/GCNU Software Skills">Joe Ziminski</a> in advance of the course.
 
 ## Materials
-Wednesday 8th Nov
+Tuesday 5th Nov
 
 * [Slides](https://docs.google.com/presentation/d/1VTX5mogZXG-9ssQRjg3d0SCZ_jgR800KfvNfVZOhkUs/edit?usp=sharing)
 
 * [Download Data](https://www.dropbox.com/sh/h782frjxyugifle/AABANGRWOGrtUmpWkJvHON9Ya?dl=0)
 
-Thursday 9th Nov
+6th - 7th November
 
-* [Slides](https://docs.google.com/presentation/d/1qS-Ua1qbegiHr-_wCDjGk1dW6ydw09YYdpP0FJpilcQ/edit?usp=drive_link)
+* [Slides](https://docs.google.com/presentation/d/1_GMxwcyVmpvXq4BpUYwgDgEKsr23Ifl1oc0mRyWB25s/edit?usp=sharing)
 
-* [Repo](https://github.com/neuroinformatics-unit/extracellular-ephys-analysis-course-2023)
+* [Repo](https://github.com/neuroinformatics-unit/course-extracellular-ephys-analysis)

_sources/courses/python-packaging.md.txt

@@ -20,7 +20,7 @@ For this course you will need a very basic knowledge of Python, and a laptop wit
 
 
 * [Sample .gitignore file](https://gist.githubusercontent.com/adamltyson/4d2b2cab224aeb94701fdddc4b894206/raw/998471179d290cf9204eb8cfe799dc32ef92e292/.gitignore)
-* [BSD-3-Clause license](https://opensource.org/licenses/BSD-3-Clause)
+* [BSD-3-Clause license](https://opensource.org/license/BSD-3-Clause)
 * [GitHub markdown guide](https://docs.github.com/en/get-started/writing-on-github/getting-started-with-writing-and-formatting-on-github/basic-writing-and-formatting-syntax)
 * [black config](https://gist.githubusercontent.com/adamltyson/559678f224ae0e1f08cf1768b319793c/raw/db170fde3be3e8511b987fd019d420a52edfb9b9/pyproject.toml)
 * [pre-commit config file](https://gist.githubusercontent.com/adamltyson/06dc8f8760feee57a4b41aa66833c835/raw/da2050d7eb4db28f17d28f591fa6eefd98946408/.pre-commit-config.yaml)

_sources/index.md.txt

@@ -9,14 +9,12 @@ the [Neuroinformatics Unit](https://neuroinformatics.dev).
 ::::{grid} 1 2 2 2
 :gutter: 3
 
-
-:::{grid-item-card} {fas}`server;sd-text-primary`  September 30th - October 8th 2024
-:link: courses/software-skills
+:::{grid-item-card} {fas}`bolt;sd-text-primary`  Extracellular electrophysiology analysis
+:link: courses/extracellular-analysis
 :link-type: doc
 
-General software skills for systems neuroscience
-+++
-Sainsbury Wellcome Centre, UCL <br>
+November 5th - October 7th 2024
+
 :::
 
 ::::
@@ -27,6 +25,14 @@ Sainsbury Wellcome Centre, UCL <br>
 ::::{grid} 1 2 2 3
 :gutter: 3
 
+:::{grid-item-card} {fas}`server;sd-text-primary`  General software skills for systems neuroscience
+:link: courses/software-skills
+:link-type: doc
+
++++
+Sainsbury Wellcome Centre, UCL <br>
+:::
+
 :::{grid-item-card} {fas}`server;sd-text-primary`  Running pose estimation on the SWC HPC system
 :link: courses/hpc-behaviour
 :link-type: doc
@@ -47,11 +53,6 @@ Sainsbury Wellcome Centre, UCL <br>
 :link-type: doc
 :::
 
-:::{grid-item-card} {fas}`bolt;sd-text-primary`  Extracellular electrophysiology analysis
-:link: courses/extracellular-analysis
-:link-type: doc
-:::
-
 :::{grid-item-card} {fas}`code;sd-text-primary`  Collaborative coding and software development good practices
 :link: courses/collaborative-coding
 :link-type: doc

_static/basic.css

@@ -1,12 +1,5 @@
 /*
- * basic.css
- * ~~~~~~~~~
- *
  * Sphinx stylesheet -- basic theme.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 
 /* -- main layout ----------------------------------------------------------- */
@@ -115,15 +108,11 @@ img {
 /* -- search page ----------------------------------------------------------- */
 
 ul.search {
-    margin: 10px 0 0 20px;
-    padding: 0;
+    margin-top: 10px;
 }
 
 ul.search li {
-    padding: 5px 0 5px 20px;
-    background-image: url(file.png);
-    background-repeat: no-repeat;
-    background-position: 0 7px;
+    padding: 5px 0;
 }
 
 ul.search li a {

_static/doctools.js

@@ -1,12 +1,5 @@
 /*
- * doctools.js
- * ~~~~~~~~~~~
- *
  * Base JavaScript utilities for all Sphinx HTML documentation.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 "use strict";
 

_static/language_data.js

@@ -1,13 +1,6 @@
 /*
- * language_data.js
- * ~~~~~~~~~~~~~~~~
- *
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 
 var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];

_static/scripts/bootstrap.js.map

@@ -1,12 +1,5 @@
 /*
- * searchtools.js
- * ~~~~~~~~~~~~~~~~
- *
  * Sphinx JavaScript utilities for the full-text search.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 "use strict";
 
@@ -20,7 +13,7 @@ if (typeof Scorer === "undefined") {
     // and returns the new score.
     /*
     score: result => {
-      const [docname, title, anchor, descr, score, filename] = result
+      const [docname, title, anchor, descr, score, filename, kind] = result
       return score
     },
     */
@@ -47,6 +40,14 @@ if (typeof Scorer === "undefined") {
   };
 }
 
+// Global search result kind enum, used by themes to style search results.
+class SearchResultKind {
+    static get index() { return  "index"; }
+    static get object() { return "object"; }
+    static get text() { return "text"; }
+    static get title() { return "title"; }
+}
+
 const _removeChildren = (element) => {
   while (element && element.lastChild) element.removeChild(element.lastChild);
 };
@@ -64,9 +65,13 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
   const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
   const contentRoot = document.documentElement.dataset.content_root;
 
-  const [docName, title, anchor, descr, score, _filename] = item;
+  const [docName, title, anchor, descr, score, _filename, kind] = item;
 
   let listItem = document.createElement("li");
+  // Add a class representing the item's type:
+  // can be used by a theme's CSS selector for styling
+  // See SearchResultKind for the class names.
+  listItem.classList.add(`kind-${kind}`);
   let requestUrl;
   let linkUrl;
   if (docBuilder === "dirhtml") {
@@ -115,8 +120,10 @@ const _finishSearch = (resultCount) => {
       "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
     );
   else
-    Search.status.innerText = _(
-      "Search finished, found ${resultCount} page(s) matching the search query."
+    Search.status.innerText = Documentation.ngettext(
+      "Search finished, found one page matching the search query.",
+      "Search finished, found ${resultCount} pages matching the search query.",
+      resultCount,
     ).replace('${resultCount}', resultCount);
 };
 const _displayNextItem = (
@@ -138,7 +145,7 @@ const _displayNextItem = (
   else _finishSearch(resultCount);
 };
 // Helper function used by query() to order search results.
-// Each input is an array of [docname, title, anchor, descr, score, filename].
+// Each input is an array of [docname, title, anchor, descr, score, filename, kind].
 // Order the results by score (in opposite order of appearance, since the
 // `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
 const _orderResultsByScoreThenName = (a, b) => {
@@ -248,6 +255,7 @@ const Search = {
     searchSummary.classList.add("search-summary");
     searchSummary.innerText = "";
     const searchList = document.createElement("ul");
+    searchList.setAttribute("role", "list");
     searchList.classList.add("search");
 
     const out = document.getElementById("search-results");
@@ -318,7 +326,7 @@ const Search = {
     const indexEntries = Search._index.indexentries;
 
     // Collect multiple result groups to be sorted separately and then ordered.
-    // Each is an array of [docname, title, anchor, descr, score, filename].
+    // Each is an array of [docname, title, anchor, descr, score, filename, kind].
     const normalResults = [];
     const nonMainIndexResults = [];
 
@@ -337,6 +345,7 @@ const Search = {
             null,
             score + boost,
             filenames[file],
+            SearchResultKind.title,
           ]);
         }
       }
@@ -354,6 +363,7 @@ const Search = {
             null,
             score,
             filenames[file],
+            SearchResultKind.index,
           ];
           if (isMain) {
             normalResults.push(result);
@@ -475,6 +485,7 @@ const Search = {
         descr,
         score,
         filenames[match[0]],
+        SearchResultKind.object,
       ]);
     };
     Object.keys(objects).forEach((prefix) =>
@@ -585,6 +596,7 @@ const Search = {
         null,
         score,
         filenames[file],
+        SearchResultKind.text,
       ]);
     }
     return results;