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Check schema against meta-schema #101

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ewels opened this issue Feb 3, 2025 · 2 comments · May be fixed by #113
Open

Check schema against meta-schema #101

ewels opened this issue Feb 3, 2025 · 2 comments · May be fixed by #113
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2.5.0

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@ewels
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ewels commented Feb 3, 2025

It would be nice if nf-schema could validate the pipeline nextflow_schema.json against the nf-schema parameters_meta_schema.json. If there are any failures these can be logged to the console as a warning (non-blocking).

This will require the meta-schema to be kept up to date, but that's no bad thing as we're hoping to use it elsewhere as well anyway ('cc @mashehu).
@awgymer
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awgymer commented Feb 13, 2025

Do we have an analogous meta schema for the samplesheet schema? Or is that currently just assumed to be able to be any valid draft 2020-12 schema?

@nvnieuwk
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For now all schemas are assumed to be 2020-12 schemas :) But the meta-schema will be used to validate the parameter schema in the future

@nvnieuwk nvnieuwk linked a pull request Mar 19, 2025 that will close this issue
Add support for official Nextflow parameters meta schema #113
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@nvnieuwk nvnieuwk modified the milestones: 2.4.0, 2.5.0 Mar 19, 2025
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Add support for official Nextflow parameters meta schema nextflow-io/nf-schema
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@ewels @awgymer @nvnieuwk