Skip to content

Commit d3a7993

Browse files
authored
Update nf4_science/genomics/04_testing.md
1 parent 8e94499 commit d3a7993

File tree

1 file changed

+12
-12
lines changed

1 file changed

+12
-12
lines changed

docs/nf4_science/genomics/04_testing.md

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -524,7 +524,7 @@ test("Should run without failures") {
524524
_After:_
525525

526526
```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="7"
527-
test("Should call son's halotype correctly") {
527+
test("Should call son's haplotype correctly") {
528528
529529
setup {
530530
run("SAMTOOLS_INDEX") {
@@ -575,9 +575,9 @@ https://www.nf-test.com
575575

576576
Test Process GATK_HAPLOTYPECALLER
577577

578-
Test [30247349] 'Should call son's halotype correctly' PASSED (20.002s)
578+
Test [30247349] 'Should call son's haplotype correctly' PASSED (20.002s)
579579
Snapshots:
580-
1 created [Should call son's halotype correctly]
580+
1 created [Should call son's haplotype correctly]
581581

582582

583583
Snapshot Summary:
@@ -606,7 +606,7 @@ https://www.nf-test.com
606606

607607
Test Process GATK_HAPLOTYPECALLER
608608

609-
Test [c847bfae] 'Should call son's halotype correctly' FAILED (19.979s)
609+
Test [c847bfae] 'Should call son's haplotype correctly' FAILED (19.979s)
610610

611611
java.lang.RuntimeException: Different Snapshot:
612612
[ [
@@ -695,7 +695,7 @@ https://www.nf-test.com
695695

696696
Test Process GATK_HAPLOTYPECALLER
697697

698-
Test [c847bfae] 'Should call son's halotype correctly' PASSED (19.33s)
698+
Test [c847bfae] 'Should call son's haplotype correctly' PASSED (19.33s)
699699

700700

701701
SUCCESS: Executed 1 tests in 19.382s
@@ -741,7 +741,7 @@ Add similar tests for the mother and father samples:
741741
}
742742
}
743743
744-
test("Should call father's halotype correctly") {
744+
test("Should call father's haplotype correctly") {
745745
746746
setup {
747747
run("SAMTOOLS_INDEX") {
@@ -793,9 +793,9 @@ https://www.nf-test.com
793793

794794
Test Process GATK_HAPLOTYPECALLER
795795

796-
Test [c847bfae] 'Should call son's halotype correctly' PASSED (19.91s)
797-
Test [44494e9c] 'Should call mother's halotype correctly' PASSED (18.606s)
798-
Test [eb0d1a07] 'Should call father's halotype correctly' PASSED (18.773s)
796+
Test [c847bfae] 'Should call son's haplotype correctly' PASSED (19.91s)
797+
Test [44494e9c] 'Should call mother's haplotype correctly' PASSED (18.606s)
798+
Test [eb0d1a07] 'Should call father's haplotype correctly' PASSED (18.773s)
799799

800800

801801
SUCCESS: Executed 3 tests in 57.348s
@@ -1181,9 +1181,9 @@ https://www.nf-test.com
11811181

11821182
Test Process GATK_HAPLOTYPECALLER
11831183

1184-
Test [c847bfae] 'Should call son's halotype correctly' PASSED (20.951s)
1185-
Test [44494e9c] 'Should call mother's halotype correctly' PASSED (19.155s)
1186-
Test [eb0d1a07] 'Should call father's halotype correctly' PASSED (21.843s)
1184+
Test [c847bfae] 'Should call son's haplotype correctly' PASSED (20.951s)
1185+
Test [44494e9c] 'Should call mother's haplotype correctly' PASSED (19.155s)
1186+
Test [eb0d1a07] 'Should call father's haplotype correctly' PASSED (21.843s)
11871187

11881188
Test Process GATK_JOINTGENOTYPING
11891189

0 commit comments

Comments
 (0)