@@ -524,7 +524,7 @@ test("Should run without failures") {
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_ After:_
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``` groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="7"
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- test("Should call son's halotype correctly") {
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+ test("Should call son's haplotype correctly") {
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setup {
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run("SAMTOOLS_INDEX") {
@@ -575,9 +575,9 @@ https://www.nf-test.com
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Test Process GATK_HAPLOTYPECALLER
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- Test [30247349] 'Should call son's halotype correctly' PASSED (20.002s)
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+ Test [30247349] 'Should call son's haplotype correctly' PASSED (20.002s)
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Snapshots:
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- 1 created [Should call son's halotype correctly]
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+ 1 created [Should call son's haplotype correctly]
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Snapshot Summary:
@@ -606,7 +606,7 @@ https://www.nf-test.com
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Test Process GATK_HAPLOTYPECALLER
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- Test [c847bfae] 'Should call son's halotype correctly' FAILED (19.979s)
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+ Test [c847bfae] 'Should call son's haplotype correctly' FAILED (19.979s)
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java.lang.RuntimeException: Different Snapshot:
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[ [
@@ -695,7 +695,7 @@ https://www.nf-test.com
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Test Process GATK_HAPLOTYPECALLER
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- Test [c847bfae] 'Should call son's halotype correctly' PASSED (19.33s)
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+ Test [c847bfae] 'Should call son's haplotype correctly' PASSED (19.33s)
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SUCCESS: Executed 1 tests in 19.382s
@@ -741,7 +741,7 @@ Add similar tests for the mother and father samples:
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}
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}
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- test("Should call father's halotype correctly") {
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+ test("Should call father's haplotype correctly") {
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setup {
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run("SAMTOOLS_INDEX") {
@@ -793,9 +793,9 @@ https://www.nf-test.com
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Test Process GATK_HAPLOTYPECALLER
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- Test [c847bfae] 'Should call son's halotype correctly' PASSED (19.91s)
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- Test [44494e9c] 'Should call mother's halotype correctly' PASSED (18.606s)
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- Test [eb0d1a07] 'Should call father's halotype correctly' PASSED (18.773s)
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+ Test [c847bfae] 'Should call son's haplotype correctly' PASSED (19.91s)
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+ Test [44494e9c] 'Should call mother's haplotype correctly' PASSED (18.606s)
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+ Test [eb0d1a07] 'Should call father's haplotype correctly' PASSED (18.773s)
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SUCCESS: Executed 3 tests in 57.348s
@@ -1181,9 +1181,9 @@ https://www.nf-test.com
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Test Process GATK_HAPLOTYPECALLER
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- Test [c847bfae] 'Should call son's halotype correctly' PASSED (20.951s)
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- Test [44494e9c] 'Should call mother's halotype correctly' PASSED (19.155s)
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- Test [eb0d1a07] 'Should call father's halotype correctly' PASSED (21.843s)
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+ Test [c847bfae] 'Should call son's haplotype correctly' PASSED (20.951s)
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+ Test [44494e9c] 'Should call mother's haplotype correctly' PASSED (19.155s)
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+ Test [eb0d1a07] 'Should call father's haplotype correctly' PASSED (21.843s)
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Test Process GATK_JOINTGENOTYPING
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