From 894dd17e39b96a0bc649fef6984e1b585cd13e69 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Mon, 10 Mar 2025 12:11:05 +0100 Subject: [PATCH] Add docker runOptions I think we might need to add docker runOptions, this seems to be an issue. cf: https://nextflow.slack.com/archives/C02TH6KNBCN/p1741604416453299 --- nf4-science/genomics/nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nf4-science/genomics/nextflow.config b/nf4-science/genomics/nextflow.config index d3af3eaae..ac683ff24 100644 --- a/nf4-science/genomics/nextflow.config +++ b/nf4-science/genomics/nextflow.config @@ -1 +1,2 @@ docker.enabled = true +docker.runOptions = '-u $(id -u):$(id -g)'