I am running the following funannotate command to incorporate all annotations into a final annotations results directory:
funannotate annotate
-i ${genomelocation}/funannotate.out/predict_results
--species "Aspergillus ${species}${strain}"
--iprscan annotate_misc/iprscan.xml
--eggnog annotate_misc/${species}${strain}.eggnog.emapper.annotations
--force
--cpus 8
I am noticing that some annotations (e.g. CAZy) contained in both annotate_misc/all.annotations.txt
and annotate_misc/annotations.dbCAN.txt files are not being incorporated into annotate_results.
I cannot figure out what I'm missing. What might I be overlooking?