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Merge pull request #645 from d4straub/update-docs-2.7dev
Update workflow overview figure & docs
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CHANGELOG.md

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@@ -12,7 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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- [#622](https://github.com/nf-core/ampliseq/pull/622) - ASV post-clustering with Vsearch
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- [#637](https://github.com/nf-core/ampliseq/pull/637) - Taxonomic classification with Kraken2, parameter `--kraken2_ref_taxonomy`, `--kraken2_ref_tax_custom`, `--kraken2_assign_taxlevels`, `--kraken2_confidence`
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- [#639](https://github.com/nf-core/ampliseq/pull/639) - GTDB release 214.1 for taxonomic classification with DADA2, using `--dada_ref_taxonomy gtdb` or `--dada_ref_taxonomy gtdb=R08-RS214`
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- [#641](https://github.com/nf-core/ampliseq/pull/641) - Continue analysis even when individual files fail the filtering threshold
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- [#641](https://github.com/nf-core/ampliseq/pull/641) - Continue analysis even when individual files fail the filtering threshold, added parameter `--ignore_failed_filtering`
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### `Changed`
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@@ -26,6 +26,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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| input_folder | input | Folder containing compressed fastq files |
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- [#639](https://github.com/nf-core/ampliseq/pull/639) - `--dada_ref_taxonomy gtdb` points towards GTDB release 214.1 instead of GTDB release 207 for taxonomic classification with DADA2
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- [#645](https://github.com/nf-core/ampliseq/pull/645) - Updated documentation, including workflow figure
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### `Fixed`
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docs/images/ampliseq_workflow.png

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