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21 Open 362 Closed
21 Open 362 Closed
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Issues list

DADA2_SPLITREGIONS fails with only one sample bug Something isn't working
#891 opened May 26, 2025 by julianSchwab
1
Add tombRaider enhancement New feature or request
#886 opened May 15, 2025 by erikrikarddaniel
@quentMa
Lower ampliseq default cpu and memory requirements enhancement New feature or request
#874 opened Apr 24, 2025 by Lumimar
3
add merge input information to dada2 reporting enhancement New feature or request
#873 opened Apr 24, 2025 by Lumimar
1
ARM end to end run
#850 opened Mar 24, 2025 by edmundmiller
General Testing Framework
#844 opened Mar 24, 2025 by Sofokli5
@npechl @Sofokli5
Ensure Databases Combatibility with ampliseq Modules
#843 opened Mar 24, 2025 by Sofokli5
@georgiakes
Create Test Datasets
#842 opened Mar 24, 2025 by Sofokli5
@Sofokli5
Add plant reference databases to enable nf-core/ampliseq support for plant samples enhancement New feature or request
#841 opened Mar 24, 2025 by Sofokli5 2.13.0
@npechl @georgiakes @Sofokli5
SRS alternative tool to rarefaction enhancement New feature or request
#819 opened Dec 17, 2024 by marwa38
2
FORMAT_PPLACETAX fails because of missing str_split function
#808 opened Nov 29, 2024 by jkibilds
1
standardize the samplesheet for ampliseq to the other nf-core pipelines enhancement New feature or request
#790 opened Oct 29, 2024 by jenmuell
4 tasks
@jenmuell
2
Improving phylogenetic placement enhancement New feature or request
#787 opened Oct 28, 2024 by danilodileo
@erickdelgadillo @danilodileo
2
Inconsistent taxonomic assignments with EPA-NG
#776 opened Sep 16, 2024 by VeronicRojo
@erikrikarddaniel
3
Add MACSE to enable frame-shift detection for COI enhancement New feature or request
#758 opened Jul 2, 2024 by hjarnek
6
Adding ONT read support for ampliseq enhancement New feature or request
#741 opened May 13, 2024 by ShareiFae
4
Add vsearch uchime_denovo for chimera removal (or flagging) enhancement New feature or request
#631 opened Aug 30, 2023 by andand
2
Add sintax support for all available databases enhancement New feature or request
#618 opened Aug 17, 2023 by jtangrot
2
Proposal: Lowest Common Ancestor (LCA) module for assigning taxonomy enhancement New feature or request
#610 opened Aug 2, 2023 by a4000
2
Proposal: Blastn as an alternative classifier enhancement New feature or request
#608 opened Aug 2, 2023 by a4000
6
Support for "Decontam" enhancement New feature or request
#224 opened Feb 18, 2021 by erikrikarddaniel
6
ProTip! Find all open issues with in progress development work with linked:pr.