Merge pull request #537 from nf-core/fix/fq2bammeth

Updated parabricks/fq2bammeth

Author: GallVp

CHANGELOG.md

@@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - 🔙 Reverted PR #523 which changes subworkflows directly in the pipeline.
 - 🔄 Updated template to nf-core/tools v3.2.0 [#](https://github.com/nf-core/methylseq/pull/)
 - 🐛 bumped the minimum for `PARABRICKS_FQ2BAMMETH` to 100.GB as suggested by the docs [#528](https://github.com/nf-core/methylseq/issues/528)
+- 🐛 fix parabricks/fq2bammeth failure on AWS Batch like executors where symlinks don't exist [#536](https://github.com/nf-core/methylseq/issues/536)
 
 ### Pipeline Updates
 

modules.json

@@ -82,7 +82,7 @@
                     },
                     "parabricks/fq2bammeth": {
                         "branch": "master",
-                        "git_sha": "2edb63067971fb906749e96bf22b23a4ec892a62",
+                        "git_sha": "ca2409607b2095e8ad375c990f256b418caedd0f",
                         "installed_by": ["fastq_align_dedup_bwameth"]
                     },
                     "picard/markduplicates": {