Merge pull request #205 from ewels/schema-fix

phue · web-flow · commit 2831fe90f94b · 2021-03-29T22:43:40.000+02:00
Remove default from schema which does not match the config
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -278,7 +278,6 @@
                 "meth_cutoff": {
                     "type": "integer",
                     "description": "Specify a minimum read coverage to report a methylation call",
-                    "default": 0,
                     "help_text": "Use to discard any methylation calls with less than a given read coverage depth (in fold coverage) during Bismark's `bismark_methylation_extractor` step.",
                     "fa_icon": "fas fa-angle-double-down"
                 },
@@ -583,4 +582,4 @@
             "$ref": "#/definitions/institutional_config_options"
         }
     ]
-}
+}

Original file line number	Diff line number	Diff line change
`@@ -278,7 +278,6 @@`
`278`	`278`	`"meth_cutoff": {`
`279`	`279`	`"type": "integer",`
`280`	`280`	`"description": "Specify a minimum read coverage to report a methylation call",`
`281`		`- "default": 0,`
`282`	`281`	"help_text": "Use to discard any methylation calls with less than a given read coverage depth (in fold coverage) during Bismark's `bismark_methylation_extractor` step.",
`283`	`282`	`"fa_icon": "fas fa-angle-double-down"`
`284`	`283`	`},`
`@@ -583,4 +582,4 @@`
`583`	`582`	`"$ref": "#/definitions/institutional_config_options"`
`584`	`583`	`}`
`585`	`584`	`]`
`586`		`-}`
	`585`	`+}`