Merge pull request #259 from nf-core/fix-tests-yml

ewels · web-flow · commit 5ed50de3b48e · 2022-11-08T16:54:17.000+01:00
Update filenames in nf-test config
diff --git a/tests/bismark/main.nf.test b/tests/bismark/main.nf.test
@@ -18,10 +18,10 @@ nextflow_pipeline {
             // FIXME assert snapshot(workflow).match()
             assert new File("$outputDir/multiqc/bismark/multiqc_report.html").exists()
 
-            assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub1_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()
-            assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub2_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()
-            assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()
-            assert path("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").md5 == "f53f4450ccb90bfa9587c0dc030cfd4f"
+            assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()
+            assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub2_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()
+            assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()
+            assert path("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_trimmed_bismark_bt2.deduplicated_splitting_report.txt").md5 == "cfd86032a2c4c913d90e155e87120a54"
         }
     }
 

Original file line number	Diff line number	Diff line change
`@@ -18,10 +18,10 @@ nextflow_pipeline {`
`18`	`18`	`// FIXME assert snapshot(workflow).match()`
`19`	`19`	`assert new File("$outputDir/multiqc/bismark/multiqc_report.html").exists()`
`20`	`20`
`21`		`- assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub1_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()`
`22`		`- assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub2_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()`
`23`		`- assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()`
`24`		`- assert path("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_T1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").md5 == "f53f4450ccb90bfa9587c0dc030cfd4f"`
	`21`	`+ assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub1_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()`
	`22`	`+ assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub2_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()`
	`23`	`+ assert new File("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_trimmed_bismark_bt2.deduplicated_splitting_report.txt").exists()`
	`24`	`+ assert path("$outputDir/bismark/methylation_calls/splitting_report/SRR389222_sub3_trimmed_bismark_bt2.deduplicated_splitting_report.txt").md5 == "cfd86032a2c4c913d90e155e87120a54"`
`25`	`25`	`}`
`26`	`26`	`}`
`27`	`27`