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Bumped PARABRICKS_FQ2BAMMETH memory to 100.GB #535

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Merged
sateeshperi merged 2 commits into from
May 25, 2025
Merged

Bumped PARABRICKS_FQ2BAMMETH memory to 100.GB #535

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45060e0
Bumped PARABRICKS_FQ2BAMMETH memory to 100.GB
GallVp May 24, 2025
90e3ba5
Merge branch 'dev' into bump/parabricks_mem
sateeshperi May 25, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

- 🐛 fix when fasta idx is not provided and bwameth is on. The error is: `Not a valid path value type: java.util.LinkedHashMap ([:])`. To replicate this you can comment the `fasta_index` in the test data.
- 🔄 Updated template to nf-core/tools v3.2.0 [#](https://github.com/nf-core/methylseq/pull/)
- 🐛 bumped the minimum for `PARABRICKS_FQ2BAMMETH` to 100.GB as suggested by the docs [#528](https://github.com/nf-core/methylseq/issues/528)

### Pipeline Updates

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3 changes: 3 additions & 0 deletions conf/base.config
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Expand Up @@ -74,4 +74,7 @@ process {
withName: BWAMETH_ALIGN {
time = { 6.d * task.attempt }
}
withName: PARABRICKS_FQ2BAMMETH {
memory = { 100.GB * task.attempt }
}
}