Update tests bwameth/index (#11187)

Update tests

Author: LouisLeNezet

modules/nf-core/bwameth/index/main.nf

@@ -13,15 +13,14 @@ process BWAMETH_INDEX {
 
     output:
     tuple val(meta), path("BwamethIndex"), emit: index
-    tuple val("${task.process}"), val('bwameth'), eval('bwameth.py --version | cut -f2 -d\' \''), emit: versions_bwameth_index, topic: versions
+    tuple val("${task.process}"), val('bwameth'), eval("bwameth.py --version | cut -f2 -d' '"), emit: versions_bwameth_index, topic: versions
 
     when:
     task.ext.when == null || task.ext.when
 
     script:
     def index_cmd = use_mem2 ? "index-mem2" : "index"
     """
-
     bwameth.py ${index_cmd} ${fasta}
 
     rm $fasta

modules/nf-core/bwameth/index/tests/main.nf.test

@@ -15,8 +15,8 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = Channel.of([
-                    [ id:'test' ], // meta map
+                input[0] = channel.of([
+                    [ id:'test' ],
                     file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta', checkIfExists: true)
                 ])
                 input[1] = false
@@ -27,7 +27,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(sanitizeOutput(process.out)).match() }
             )
         }
     }
@@ -37,8 +37,8 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = Channel.of([
-                    [ id:'test' ], // meta map
+                input[0] = channel.of([
+                    [ id:'test' ],
                     file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta', checkIfExists: true)
                 ])
                 input[1] = true
@@ -49,7 +49,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(sanitizeOutput(process.out)).match() }
             )
         }
     }

modules/nf-core/bwameth/index/tests/main.nf.test.snap

@@ -2,28 +2,6 @@
     "sarscov2 genome [fasta] - mem2": {
         "content": [
             {
-                "0": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        [
-                            "genome.fasta.bwameth.c2t:md5,98039984526a41d04d6bd92fcc040c62",
-                            "genome.fasta.bwameth.c2t.0123:md5,1b92d7081e7b54dafcd97aac45a8076d",
-                            "genome.fasta.bwameth.c2t.amb:md5,249a4195069071ce47cd0bae68abe376",
-                            "genome.fasta.bwameth.c2t.ann:md5,46524d4359dcdfb203a235ab3b930dbb",
-                            "genome.fasta.bwameth.c2t.bwt.2bit.64:md5,52fa820b3a029fe6a9b2e18972f616f2",
-                            "genome.fasta.bwameth.c2t.pac:md5,4d8e51cb0bbdeaf24576bdf0264d8653"
-                        ]
-                    ]
-                ],
-                "1": [
-                    [
-                        "BWAMETH_INDEX",
-                        "bwameth",
-                        "0.2.9"
-                    ]
-                ],
                 "index": [
                     [
                         {
@@ -48,37 +26,15 @@
                 ]
             }
         ],
+        "timestamp": "2026-04-14T18:39:35.811012862",
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "25.10.3"
-        },
-        "timestamp": "2026-03-12T10:58:49.062626304"
+            "nf-test": "0.9.5",
+            "nextflow": "25.10.4"
+        }
     },
     "sarscov2 genome [fasta]": {
         "content": [
             {
-                "0": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        [
-                            "genome.fasta.bwameth.c2t:md5,98039984526a41d04d6bd92fcc040c62",
-                            "genome.fasta.bwameth.c2t.amb:md5,249a4195069071ce47cd0bae68abe376",
-                            "genome.fasta.bwameth.c2t.ann:md5,46524d4359dcdfb203a235ab3b930dbb",
-                            "genome.fasta.bwameth.c2t.bwt:md5,84f65df7d42dbe84c9ccfaddfdd5ea6b",
-                            "genome.fasta.bwameth.c2t.pac:md5,4d8e51cb0bbdeaf24576bdf0264d8653",
-                            "genome.fasta.bwameth.c2t.sa:md5,d25f6486f5134f57ed5b258f6fbb8673"
-                        ]
-                    ]
-                ],
-                "1": [
-                    [
-                        "BWAMETH_INDEX",
-                        "bwameth",
-                        "0.2.9"
-                    ]
-                ],
                 "index": [
                     [
                         {
@@ -103,10 +59,10 @@
                 ]
             }
         ],
+        "timestamp": "2026-04-14T18:39:27.16458196",
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "25.10.3"
-        },
-        "timestamp": "2026-03-12T10:58:42.898455483"
+            "nf-test": "0.9.5",
+            "nextflow": "25.10.4"
+        }
     }
 }