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modules/nf-core/centrifuger/centrifuger Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -28,18 +28,18 @@ input:
2828 ontologies :
2929 - edam : http://edamontology.org/format_1930 # FASTQ
3030 - db :
31- type : directory
32- description : Path to directory containing Centrifuger database files.
33- ontologies :
34- - edam : http://edamontology.org/format_1930 # FASTQ
31+ type : directory
32+ description : Path to directory containing Centrifuger database files.
33+ ontologies :
34+ - edam : http://edamontology.org/format_1930 # FASTQ
3535 - save_unclassified :
36- type : boolean
37- description : |
38- Optional - if true, output unclassified reads.
36+ type : boolean
37+ description : |
38+ Optional - if true, output unclassified reads.
3939 - save_classified :
40- type : boolean
41- description : |
42- Optional - if true, output classified reads.
40+ type : boolean
41+ description : |
42+ Optional - if true, output classified reads.
4343output :
4444 classification_file :
4545 - - meta :
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