Search results

The <code>--targetName</code> option has no icon in the documentation

bugSomething isn't workingSomething isn't working

Status: Open.

#92 In nf-core/pairgenomealign;

· charles-plessy opened on Sep 5, 2025

Increase target–query symmetry with<code>--gapsym</code> and <code>--matsym</code>.

enhancementNew feature or requestNew feature or request

Status: Open.

#91 In nf-core/pairgenomealign;

· charles-plessy opened on Sep 1, 2025

· 

3.0.0

nf-core logo does not look pristine in the subway map.

bugSomething isn't workingSomething isn't working

Status: Open.

#90 In nf-core/pairgenomealign;

· charles-plessy opened on Aug 18, 2025

· 

2.3.0

Use CRAM 3.1

enhancementNew feature or requestNew feature or request

Status: Open.

#86 In nf-core/pairgenomealign;

· charles-plessy opened on Aug 1, 2025

· 

3.0.0

AWS full test workflow revision handling differs from nf-core standard

Status: Open.

#85 In nf-core/pairgenomealign;

· edmundmiller opened on Jul 31, 2025

VCF output support

enhancementNew feature or requestNew feature or request

Status: Open.

#82 In nf-core/pairgenomealign;

· charles-plessy opened on Jul 2, 2025

· 

2.3.0

Document at least the _target_ genome length in <code>last/lastal</code> report.

enhancementNew feature or requestNew feature or request

Status: Open.

#77 In nf-core/pairgenomealign;

· charles-plessy opened on May 31, 2025

· 

2.3.0

Test for file existence in <code>nextflow_schema.json</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#73 In nf-core/pairgenomealign;

· charles-plessy opened on May 30, 2025

Export chromosome legths in GFF3 headers.

enhancementNew feature or requestNew feature or request

Status: Open.

#70 In nf-core/pairgenomealign;

· charles-plessy opened on May 24, 2025

· 

2.3.0

Transform <code>modules/local/multiqc_assemblyscan_plot_data</code> into an assemblyscan MultiQC module

enhancementNew feature or requestNew feature or request

Status: Open.

#67 In nf-core/pairgenomealign;

· charles-plessy opened on May 23, 2025

Adjust process requirements to test_full case.

enhancementNew feature or requestNew feature or request

Status: Open.

#61 In nf-core/pairgenomealign;

· charles-plessy opened on May 16, 2025

· 

2.3.0

Multi-sequence CRAM output

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In nf-core/pairgenomealign;

· charles-plessy opened on May 16, 2025

· 

2.3.0