Skip to content

Commit 69dd9b2

Browse files
MNT: Address deprecation warning in CI
FutureWarning: The 'delim_whitespace' keyword in pd.read_csv is deprecated and will be removed in a future version. Use ``sep='\s+'`` instead
1 parent dc783d8 commit 69dd9b2

File tree

1 file changed

+4
-7
lines changed

1 file changed

+4
-7
lines changed

niworkflows/interfaces/utility.py

+4-7
Original file line numberDiff line numberDiff line change
@@ -251,8 +251,7 @@ class AddTSVHeader(SimpleInterface):
251251
>>> addheader.inputs.in_file = 'data.tsv'
252252
>>> addheader.inputs.columns = ['a', 'b', 'c', 'd', 'e']
253253
>>> res = addheader.run()
254-
>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
255-
... index_col=None)
254+
>>> df = pd.read_csv(res.outputs.out_file, sep='\s+', index_col=None)
256255
>>> df.columns.ravel().tolist()
257256
['a', 'b', 'c', 'd', 'e']
258257
@@ -311,7 +310,7 @@ class JoinTSVColumns(SimpleInterface):
311310
>>> join.inputs.in_file = 'data.tsv'
312311
>>> join.inputs.join_file = 'add.tsv'
313312
>>> res = join.run()
314-
>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
313+
>>> df = pd.read_csv(res.outputs.out_file, sep='\s+',
315314
... index_col=None, dtype=float, header=None)
316315
>>> df.columns.ravel().tolist() == list(range(5))
317316
True
@@ -328,8 +327,7 @@ class JoinTSVColumns(SimpleInterface):
328327
>>> res = join.run()
329328
>>> res.outputs.out_file # doctest: +ELLIPSIS
330329
'...data_joined.tsv'
331-
>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
332-
... index_col=None)
330+
>>> df = pd.read_csv(res.outputs.out_file, sep='\s+', index_col=None)
333331
>>> df.columns.ravel().tolist()
334332
['a', 'b', 'c', 'd', 'e']
335333
@@ -342,8 +340,7 @@ class JoinTSVColumns(SimpleInterface):
342340
>>> join.inputs.side = 'left'
343341
>>> join.inputs.columns = ['a', 'b', 'c', 'd', 'e']
344342
>>> res = join.run()
345-
>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
346-
... index_col=None)
343+
>>> df = pd.read_csv(res.outputs.out_file, sep='\s+', index_col=None)
347344
>>> df.columns.ravel().tolist()
348345
['a', 'b', 'c', 'd', 'e']
349346

0 commit comments

Comments
 (0)