New OxyPOM version 2.0.0 with minor changes in readme

Author: og

ChangeLog.md

@@ -9,7 +9,15 @@ SPDX-FileContributor: Carsten Lemmen <carsten.lemmen@hereon.de>
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-# Release notes for version 1.0.1 (ongoing)
+# Release notes for version 2.0.0 (ongoing)
+
+- Virus infection as a mortality for micro-algae
+- Clean up unused variables
+- Revised re-aeration routine
+- Revised temperature-dependent mortality
+- Revised stoichiometry for micro-algae
+
+# Release notes for version 1.0.1
 
 - Cleanup of git history
 - Simulation results available as artifacts

Makefile

@@ -2,7 +2,7 @@
 # SPDX-License-Identifier: CC0-1.0
 # SPDX-FileContributor: Carsten Lemmen <carsten.lemmen@hereon.de>
 
-VERSION=1.0.0
+VERSION=2.0.0
 DATE=$(shell  date +%Y-%m-%d)
 IP=$(shell ifconfig en0 | grep inet\  | cut -d " " -f2)
 PWD=$(shell pwd)

ReadMe.md

@@ -112,7 +112,7 @@ Apache-2.0 (OxyPOM and DiaMo)
 
 ## Project status
 
-This is part of the `DAM-ElbeXtreme` project.
+This is part of the `DAM-ElbeXtgreme` project.
 
 ## Contributing and reporting
 
@@ -128,3 +128,13 @@ On the following page "Login to Helmholtz AAI OAuth2 Authorization Server", sear
 If you are not already registered on the HIFIS GitLab instance, a confirmation email will be sent to the primary email address registered with your authentication provider.
 After clicking the confirmation link, you will also be asked to provide a name on this GitLab instance; this will be your nickname.
 Help on this one-time registration process is available from [https://hifis.net/tutorial/2021/06/23/how-to-helmholtz-aai.html](https://hifis.net/tutorial/2021/06/23/how-to-helmholtz-aai.html).
+
+## Building the package
+
+To build a new package, after committing the changes:
+
+  1. describe new, deprecated and changed features in `ChangeLog.md`.
+  2. change the version value `VERSION=NEW_VERSION` in `Makefile`
+  3. make the package, i.e. run `make version`
+  4. create a new version tag with `git tag vNEW_VERSION`
+  5. push your changes

codemeta.json

@@ -6,10 +6,10 @@
   "contIntegration": "https://codebase.helmholtz.cloud/dam-elbextreme/oxypom/-/pipelines",
   "dateCreated": "2025-01-24",
   "datePublished": "2025-03-13",
-  "dateModified": "2025-03-21",
+  "dateModified": "2025-09-03",
   "issueTracker": "https://codebase.helmholtz.cloud/dam-elbextreme/oxypom/-/issues",
   "name": "FABM OxyPOM and DiaMO: simple models for dissolved oxygen and biogeochemistry",
-  "version": "1.0.0",
+  "version": "2.0.0",
   "description": "OxyPOM (Oxygen and Particulate Organic Matter) and DiaMO (Diagnostic Model for Oxygen) are aquatic biogeochemical models that consider key processes for dissolved oxygen (DO) dynamics, such as re-aeration, mineralization, and primary production. Both models are implemented in the Fortran-based Framework for Aquatic Biogeochemical Models [FABM], which enables their deployment in different physical drivers in realistic and idealized applications. Additional routines for calculating the attenuation of photosynthetically active radiation are included. The processes represented in OxyPOM and DiaMO enable studying DO in fresh, marine, and transitional waters.",
   "applicationCategory": "Biogeochemical modeling",
   "funding": "public",