Bug in EDPluginControlDozorv1_0: no valid convert

[jordiandreu]

The Dozor plugin (EDPluginControlDozorv1_0.py) fails to parse spot file leading to the following error:

20180921-124119 Traceback (most recent call last):
20180921-124119 File "/mnt/hpcsoftware/bl13/edna-mx-devel/kernel/src/EDAction.py", line 111, in executeKernel
20180921-124119 self.process()
20180921-124119 File "/mnt/hpcsoftware/bl13/edna-mx-devel/mxv1/plugins/EDPluginControlDozor-v1.0/plugins/EDPluginControlDozorv1_0.py", line 254, in proce
ss
20180921-124119 numpyArray = numpy.loadtxt(spotFile, skiprows=3)
20180921-124119 File "/usr/lib64/python2.7/site-packages/numpy/lib/npyio.py", line 827, in loadtxt
20180921-124119 items = [conv(val) for (conv, val) in zip(converters, vals)]
20180921-124119 ValueError: could not convert string to float: *******

SpotFile:

../EDApplication_20180921-124112/ControlInterfaceToMXCuBEv1_3/ControlInterfacev1_2/Characterisation/Indexing/ControlImageQualityIndicatorsv1_5/ControlDozor_ref-testvic_5_0001/Dozor_00001/00001.spot

The spotFile contains ******* values in its columns and they cannot be converted using the numpy.loadtxt method. A workaround would be to replace this method by the genfromtxt which allows to exclude certain string from the conversion.

However, the root of the error is in the spotFile. The file format recorder seems to not be able to write values larger than 99999.9 into the spotFile columns. Is is possible to change the format for the spotFile column values?

[olofsvensson]

Thanks for this feedback! Would it be possible for you to send me the spot file that created this issue? Also, which version Dozor are you using?

[jordiandreu]

Hi @olofsvensson,
The Dozor version is:

Program dozor /A.Popov & G.Bourenkov/
Version 1.3.1 // 03.12.2014
Copyright 2014 by Alexander Popov and Gleb Bourenkov

Find attached the spot file:
00001.spot.txt