test flip added

Author: agalitsyna

tests/test_parse2.py

@@ -22,6 +22,7 @@ def test_mock_pysam_parse2_read():
                 "-c",
                 mock_chroms_path,
                 "--add-pair-index",
+                "--flip",
                 "--report-position",
                 "junction",
                 "--report-orientation",
@@ -81,6 +82,7 @@ def test_mock_pysam_parse2_pair():
                 "-c",
                 mock_chroms_path,
                 "--add-pair-index",
+                "--flip",
                 "--report-position",
                 "outer",
                 "--report-orientation",