Merge branch 'release/3.0.1'

Author: LEDfan

Jenkinsfile

@@ -3,6 +3,7 @@ pipeline {
     agent {
         kubernetes {
             yamlFile 'kubernetesPod.yaml'
+            workspaceVolume dynamicPVC(accessModes: 'ReadWriteOnce', requestsSize: '40Gi')
         }
     }
 
@@ -20,7 +21,7 @@ pipeline {
 
                      configFileProvider([configFile(fileId: 'maven-settings-rsb', variable: 'MAVEN_SETTINGS_RSB')]) {
 
-                         sh 'mvn -B -s $MAVEN_SETTINGS_RSB -U clean deploy'
+                         sh 'mvn -B -s $MAVEN_SETTINGS_RSB -Dmaven.repo.local=/home/jenkins/agent/m2 -U clean deploy'
 
                      }
                 }

kubernetesPod.yaml

@@ -1,20 +1,30 @@
 apiVersion: v1
 kind: Pod
 metadata:
+  name: shinyproxy
   labels:
     ci: shinyproxy-build
 spec:
+  securityContext:
+    fsGroup: 65534
   containers:
-   - name: containerproxy-build
-     image: 196229073436.dkr.ecr.eu-west-1.amazonaws.com/openanalytics/containerproxy-build
-     command:
-     - cat
-     tty: true
-     resources:
-       requests:
-         memory: "2Gi"
-         cpu: "1.0"
-       limits:
-         memory: "4Gi"
-         cpu: "1.5"
-
+    - name: containerproxy-build
+      image: 196229073436.dkr.ecr.eu-west-1.amazonaws.com/openanalytics/containerproxy-build
+      securityContext:
+        privileged: true
+      command: [ "sh" ]
+      args: [ "/usr/src/app/docker-entrypoint.sh" ]
+      tty: true
+      volumeMounts:
+        - name: workspace-volume
+          subPath: docker
+          mountPath: /var/lib/docker
+      resources:
+        requests:
+          ephemeral-storage: "20Gi"
+          memory: "2Gi"
+          cpu: "1.0"
+        limits:
+          memory: "4Gi"
+          cpu: "1.5"
+          ephemeral-storage: "20Gi"

pom.xml

@@ -5,7 +5,7 @@
 
 	<groupId>eu.openanalytics</groupId>
 	<artifactId>shinyproxy</artifactId>
-	<version>3.0.0</version>
+	<version>3.0.1</version>
 	<packaging>jar</packaging>
 
 	<name>ShinyProxy</name>
@@ -28,7 +28,7 @@
 		<java.version>1.8</java.version>
 		<maven.compiler.source>8</maven.compiler.source>
 		<maven.compiler.target>8</maven.compiler.target>
-		<containerproxy.version>1.0.0</containerproxy.version>
+		<containerproxy.version>1.0.1</containerproxy.version>
 		<resource.delimiter>&amp;</resource.delimiter>
 	</properties>
 

src/main/java/eu/openanalytics/shinyproxy/AppRequestInfo.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *
@@ -20,9 +20,6 @@
  */
 package eu.openanalytics.shinyproxy;
 
-import eu.openanalytics.containerproxy.model.runtime.ParameterValues;
-import eu.openanalytics.containerproxy.util.BadRequestException;
-
 import javax.servlet.http.HttpServletRequest;
 import java.util.regex.Matcher;
 import java.util.regex.Pattern;
@@ -37,7 +34,6 @@ public class AppRequestInfo {
     private final String appInstance;
     private final String subPath;
     private final String appPath;
-    private ParameterValues providedParameters = null;
 
     public AppRequestInfo(String appName, String appInstance, String appPath, String subPath) {
         this.appName = appName;
@@ -46,37 +42,26 @@ public AppRequestInfo(String appName, String appInstance, String appPath, String
         this.subPath = subPath;
     }
 
-    public static AppRequestInfo fromRequestOrException(HttpServletRequest request) {
-        AppRequestInfo result = fromURI(request.getRequestURI());
-        if (result == null) {
-            throw new BadRequestException("Error parsing URL.");
-        }
-        return result;
+    public static AppRequestInfo fromRequestOrNull(HttpServletRequest request) {
+        return fromURI(request.getRequestURI());
     }
 
-    public static AppRequestInfo fromRequestOrException(HttpServletRequest request, ParameterValues providedParameters) {
-        AppRequestInfo result = fromRequestOrException(request);
-        result.setProvidedParameters(providedParameters);
-        return result;
-    }
-
-
     public static AppRequestInfo fromURI(String uri) {
         Matcher appMatcher = APP_PATTERN.matcher(uri);
         Matcher appInstanceMatcher = APP_INSTANCE_PATTERN.matcher(uri);
         if (appInstanceMatcher.matches()) {
             String appName = appInstanceMatcher.group(2);
             if (appName == null || appName.trim().equals("")) {
-                throw new BadRequestException("Error parsing URL: name of app not found in URL.");
+                return null;
             }
 
             String appInstance = appInstanceMatcher.group(3);
             if (appInstance == null || appInstance.trim().equals("")) {
-                throw new BadRequestException("Error parsing URL: name of instance not found in URL.");
+                return null;
             }
 
             if (appInstance.length() > 64 || !INSTANCE_NAME_PATTERN.matcher(appInstance).matches()) {
-                throw new BadRequestException("Error parsing URL: name of instance contains invalid characters or is too long.");
+                return null;
             }
 
             String subPath = appInstanceMatcher.group(4);
@@ -93,7 +78,7 @@ public static AppRequestInfo fromURI(String uri) {
         } else if (appMatcher.matches()) {
             String appName = appMatcher.group(2);
             if (appName == null || appName.trim().equals("")) {
-                throw new BadRequestException("Error parsing URL: name of app not found in URL.");
+                return null;
             }
 
             String appInstance = "_";
@@ -138,12 +123,4 @@ public String getAppPath() {
         return appPath;
     }
 
-    public ParameterValues getProvidedParameters() {
-        return providedParameters;
-    }
-
-    private void setProvidedParameters(ParameterValues providedParameters) {
-        this.providedParameters = providedParameters;
-    }
-
 }

src/main/java/eu/openanalytics/shinyproxy/AuthenticationRequiredFilter.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *

src/main/java/eu/openanalytics/shinyproxy/ShinyProxyConfiguration.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *

src/main/java/eu/openanalytics/shinyproxy/ShinyProxyIframeScriptInjector.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *
@@ -137,7 +137,10 @@ public void terminateWrites() throws IOException {
     private void updateContentLength(HttpServerExchange exchange, ByteBuffer output) {
         long length = output.limit();
 
-        exchange.getResponseHeaders().put(Headers.CONTENT_LENGTH, length);
+        // check works case-insensitive
+        if (!exchange.getResponseHeaders().contains("Transfer-Encoding")) {
+            exchange.getResponseHeaders().put(Headers.CONTENT_LENGTH, length);
+        }
 
         // also update length of ServerFixedLengthStreamSinkConduit
         if (next instanceof ServerFixedLengthStreamSinkConduit) {

src/main/java/eu/openanalytics/shinyproxy/ShinyProxySpecExtension.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *

src/main/java/eu/openanalytics/shinyproxy/ShinyProxySpecExtensionProvider.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *

src/main/java/eu/openanalytics/shinyproxy/ShinyProxySpecProvider.java

@@ -1,7 +1,7 @@
 /**
  * ShinyProxy
  *
- * Copyright (C) 2016-2021 Open Analytics
+ * Copyright (C) 2016-2023 Open Analytics
  *
  * ===========================================================================
  *