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lines changed- analysis
- FBA_variants
- FBA
- FVA
- ICONGEMs
- alternateOptimalSolutions
- atomicallyResolveReconstruction
- conservedMoieties
- entropicFBA
- geneKO
- genericKinetics
- numCharact
- nutritionAlgorithm
- nutritionToolbox
- pFBA
- persephone
- pdfs
- quadPrecisionFBA
- relaxedFBABounds
- relaxedFBA
- sensitivityAnalysis
- simulateAGORAGrowthInDiets
- sparseFBA
- steadyCom
- uniformSampling
- vonBertalanffy
- combinedModel
- componentContribution
- findThermoConsistentFluxSubset
- base
- IO
- benchmarkSolvers
- cobrarrow
- engagingWithTheCommunity
- initializeAndVerify
- initialize
- intro
- verify
- dataIntegration
- XomicsToModel
- extractionTranscriptomic
- fitExperimentalFlux
- metaboAnnotator
- metabotools
- tutorial_II
- tutorial_I
- thermoKernel
- uFBA
- deprecated/_recon2FBAmodel
- design
- TrimGdel
- optForceGAMS
- optForce
- optGene
- optKnock
- Results
- reconstruction
- COBRAconcepts
- constrainingModels
- demeter
- ecoliCoreModel
- part1
- part2
- part3
- fastGapFill
- fidelityTesting
- leakSiphonModes
- metaboRePort
- modelATPYield
- modelBorgifier
- modelCreation
- modelManipulation
- modelProperties
- modelSanityChecks
- rBioNet
- recon2FBAmodel
- reconstructionSOP
- visualization
- EFMviz
- SAMMIM
- cellDesigner
- createMetIntrcNetworkTutorial
- metabolicCartography
- paint4Net
- remoteVisualisation
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