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@Medical-Image-Analysis-Laboratory Medical Image Analysis Laboratory

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    26 repositories

    • fetmrqc_sr

      Public
      Python
      •
      Apache License 2.0
      •2•2•2•0•Updated Nov 24, 2025Nov 24, 2025

    • a-eye

      Public
      AI large-scale MRI model of the Eye​
      Dockerfile
      •2•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • fetalsyngen

      Public
      Synthetic data generator based on the domain randomization idea.
      Python
      •
      Apache License 2.0
      •1•2•1•1•Updated Oct 27, 2025Oct 27, 2025

    • lisasegm

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 12, 2025Oct 12, 2025

    • segsynthtemplate

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • dl_fiber_domain_shift

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 20, 2025Sep 20, 2025

    • knit_infant_thalamic_nuclei

      Public
      Code for the KNIT (K-means for Nuclei in Infant Thalamus) framework
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • fetmrqc

      Public
      FetMRQC is a tool for quality assessment (QA) and quality control (QC) of T2-weighted (T2w) fetal brain MR images.
      Python
      •
      Apache License 2.0
      •4•9•5•0•Updated May 13, 2025May 13, 2025

    • Perinatal_fODF_DL_estimation

      Public
      Python
      •0•5•0•0•Updated Apr 3, 2025Apr 3, 2025

    • fabian_utils

      Public
      Python wrapper to run fabian
      MATLAB
      •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • PaCINeMA

      Public
      CINeMA: Conditional Implicit Neural Multi-Modal Atlas for a Spatio-Temporal Representation of the Developing Brain
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Mar 24, 2025Mar 24, 2025

    • FetalSynthSeg

      Public
      FetalSynthSeg Code
      Python
      •
      Other
      •1•15•1•0•Updated Mar 20, 2025Mar 20, 2025

    • fetal_brain_utils

      Public
      Utilities for fetal brain reconstruction pipelines
      Python
      •0•4•0•0•Updated Feb 17, 2025Feb 17, 2025

    • fetal_t2mapping

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • interpret-lesion-unc

      Public
      Multiple sclerosis cortical lesion segmentation model on MP2RAGE - DE and MCDP uncertainty quantification - Lesion-scale uncertainty - Instance-wise uncertainty - Interpretability of lesion-scale uncertainty - Interpretability of instance-wise uncertainty
      Python
      •
      Other
      •2•3•0•0•Updated Jul 9, 2024Jul 9, 2024

    • MS_WML_uncs

      Public
      This repository contains the code used for the study of voxel- and lesion- scale uncertainty in application to white matter multiple sclerosis segmentation task.
      Python
      •
      Other
      •2•2•0•0•Updated Apr 30, 2024Apr 30, 2024

    • FaBiAN

      Public
      FaBiAN is the first Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates realistic T2-weighted magnetic resonance images of the developing fetal brain throughout gestation. It is open source and supports reproducibility studies to improve fetal brain diagnosis.
      mrinumerical-simulationsmri-brainfetal-mri
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •7•6•1•1•Updated Nov 22, 2023Nov 22, 2023

    • mialsuperresolutiontoolkit

      Public
      The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.
      workflowmribidsitksuper-resolutionnipypefetalbids-apps
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •15•29•17•0•Updated Nov 10, 2023Nov 10, 2023

    • MS-Rims

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Sep 25, 2023Sep 25, 2023

    • MSLesions3D

      Public
      Automated detection of multiple sclerosis white matter lesions using a 3D single shot detector
      Python
      •0•2•0•0•Updated Mar 1, 2023Mar 1, 2023

    • CLaiMS

      Public
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Apr 26, 2022Apr 26, 2022

    • FetalBrainDMRI_CrossingPhantom

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 6, 2021Dec 6, 2021

    • Perinatal_SR_Autoencoder

      Public
      Network code for autoencoder training on dMRI pre-term newborns of the developing Human Connectome Project (dHCP)
      Python
      •0•4•0•0•Updated Dec 6, 2021Dec 6, 2021

    • MS-lesion-segmentation

      Public
      Apache License 2.0
      •1•1•0•0•Updated Jul 13, 2020Jul 13, 2020

    • mevislabFetalMRI

      Public
      some fetal mri superresolution tools developed on Mevislab
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 5, 2020Jun 5, 2020

    • MBIS

      Public
      An open source multivariate statistical n-classes clustering tool including graph-cuts optimization with specialization to brain imaging
      C++
      •7•1•0•0•Updated Jul 10, 2017Jul 10, 2017