Repositories list

• billings-comp-agdist-public

  Public
  Code and data associated with Billings et al., "Different antigenic distance metrics generate similar predictions of influenza vaccine response breadth despite low correlation", in preparation.

  influenzavaccinescohort-study+ 4secondary-data-analysisantigenic-distancevaccine-breadthmeasurement-reliability

  TeX

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• data-analysis-template

  Public template
  A template file and folder structure for a data analysis project/paper done with R/Quarto/Github.

  HTML

  •13•24•2•0•Updated Jun 18, 2025Jun 18, 2025

• billings-high-dose-heterologous-public

  Public archive
  Code and data associated with Billings et al., "High dose inactivated influenza vaccine inconsistently improves heterologous antibody responses in an elderly human cohort", JID 2025.

  biostatisticsepidemiologybrms+ 10influenzavaccinescausal-inferencebayesian-statisticscomputational-epidemiologyimmunogenicity-predictioninfluenza-vaccine+ 3

  TeX

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

• agdist

  Public
  WIP package for calculating multiple antigenic distance metrics for influenza data through a unified interface

  R

  •

  GNU Affero General Public License v3.0

  •1•1•5•0•Updated Jun 10, 2025Jun 10, 2025

• billings-breadth-quantification-public

  Public
  Code and data associated with Billings et al., "A novel method for robust quantification of influenza vaccine strength and breadth", in preparation

  R

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• hgp

  Public
  HandelGroupPackage - misc utility functions

  R

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Jun 5, 2025Jun 5, 2025

• Censored-Data-Tutorials

  Public
  Handelgroup repo discussing how to deal with censored variables (in Bayesian models).

  HTML

  •0•1•3•0•Updated May 2, 2025May 2, 2025

• hammerton-estimating-dose-ve-public

  Public
  This repository contains all the necessary code and data to reproduce the analysis and products of "Estimating standard-dose and high-dose Fluzone vaccine efficacies for influenza A based on HAI titers"

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• DSAIRM

  Public
  R Package - Dynamical Systems Approach to Immune Response Modeling

  HTML

  •15•34•0•0•Updated Jul 19, 2024Jul 19, 2024

• modelbuilder

  Public
  Building Compartmental Mechanistic Models Without Coding

  HTML

  •9•3•1•0•Updated Apr 11, 2024Apr 11, 2024

• DSAIDE

  Public
  R Package - Dynamical Systems Approach to Infectious Disease Epidemiology

  HTML

  •18•26•0•0•Updated Jan 22, 2024Jan 22, 2024

• billings-patient-reported-symptom-data-public

  Public archive
  Code to accompany "Use of Patient-Reported Symptom Data in Clinical Decision Rules for Predicting Influenza in a Telemedicine Setting" by Billings et al, JABFM 2023

  modelingbiostatisticsepidemiology+ 7influenzatriagetelemedicinecohort-studiesinfectious-diseaserespiratory-diseaseclinical-decision

  R

  •0•0•0•0•Updated Nov 10, 2023Nov 10, 2023

• SHIVERS2

  Public
  fork of repo from Mettelman et al Nat Imm 2023

  R

  •1•0•0•0•Updated Jul 10, 2023Jul 10, 2023

• ge-2023-eid-paper

  Public
  Effect of Norovirus Inoculum Dose on Virus Kinetics, Shedding, and Symptoms

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Jun 26, 2023Jun 26, 2023

• modelanalyzer

  Public
  0•0•0•0•Updated May 30, 2020May 30, 2020

• modelrepository

  Public
  Repository of user-contributed modelbuilder models

  1•0•0•0•Updated Mar 20, 2019Mar 20, 2019