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    15 repositories

    • boileroom

      Public
      Protein prediction models implemented with Modal
      Python
      •
      MIT License
      •3•24•26•1•Updated Oct 1, 2025Oct 1, 2025

    • bagel

      Public
      Protein Engineering via Exploration of an Energy Landscape
      Python
      •
      MIT License
      •13•79•49•0•Updated Sep 29, 2025Sep 29, 2025

    • ecstasy

      Public
      Benchmarking different models
      Python
      •
      MIT License
      •0•0•2•1•Updated Sep 5, 2025Sep 5, 2025

    • boltz

      Public
      Official repository for the Boltz biomolecular interaction models
      Python
      •
      MIT License
      •572•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • esm

      Public
      Evolutionary Scale Modeling (esm): Pretrained language models for proteins
      Python
      •
      MIT License
      •748•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • openfold

      Public
      Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •626•0•0•1•Updated Jun 26, 2025Jun 26, 2025

    • EnzymeOpt

      Public
      Combination of protein language model and MC sampling to optimize enzymes
      0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • softnanotools

      Public
      Tools for programming
      Python
      •
      GNU General Public License v3.0
      •0•4•8•1•Updated Aug 8, 2024Aug 8, 2024

    • Self-Evolving-Neural_Networks

      Public
      Urop project regarding Self Evolving Neural Networks. It is not yet finished.
      Jupyter Notebook
      •0•0•0•0•Updated Dec 28, 2022Dec 28, 2022

    • hpc-tutorial

      Public
      A set of tutorials using & running simulations on the HPC at Imperial, our group workstation.
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 18, 2022May 18, 2022

    • hydrogels

      Public
      Tools for generating simulations of gels
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 1, 2022Jan 1, 2022

    • softnanoweb

      Public
      CSS
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2021Oct 22, 2021

    • drawNA

      Public
      DNA Tools for Simulations
      dna-origami
      Python
      •
      GNU General Public License v3.0
      •2•7•10•2•Updated Jun 7, 2021Jun 7, 2021

    • github-tutorial

      Public
      A tutorial for new students learning how to use github
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 17, 2021Feb 17, 2021

    • starpolymers

      Public
      Simulation tools for LAMMPS system generation and analysis for polyelectrolyte condensation
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 29, 2020Jun 29, 2020