Vitessce

All

11 repositories

vitessce
Public
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
data-visualization single-cell imaging zarr kharchenkolab hubmap vitessce hidivelab
JavaScript
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MIT License
•51•219•403•34•Updated Aug 29, 2025Aug 29, 2025
easy_vitessce
Public
Python
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MIT License
•2•4•3•0•Updated Aug 28, 2025Aug 28, 2025
vitessce-python
Public
Python API and Jupyter widget for Vitessce
data-visualization single-cell jupyter-widget jupyterlab-extension ipywidget kharchenkolab vitessce hidivelab
Python
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MIT License
•9•53•106•9•Updated Aug 27, 2025Aug 27, 2025
vitessce-link
Public
TypeScript
•0•0•1•0•Updated Aug 20, 2025Aug 20, 2025
vitessceR
Public
R API and htmlwidget for Vitessce
data-visualization single-cell htmlwidget kharchenkolab vitessce rstudio-widget hidivelab
R
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Other
•7•42•17•5•Updated Aug 13, 2025Aug 13, 2025
vitessce-demo-gh-pages
Public
Demo of deploying a Vitessce instance to GitHub Pages
JavaScript
•2•0•0•0•Updated May 8, 2025May 8, 2025
vitessceAnalysisR
Public
Data conversion helpers for data analysis with vitessceR
R
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Other
•0•4•9•1•Updated Jun 20, 2024Jun 20, 2024
paper-figures
Public
Jupyter Notebook
•0•0•0•0•Updated May 24, 2024May 24, 2024
negspy
Public
Python NGS Repository
Python
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MIT License
•14•0•0•0•Updated Feb 8, 2024Feb 8, 2024
vitessce-python-tutorial
Public
Notebooks for HuBMAP tutorial session (January 2023)
single-cell vitessce hidivelab
Jupyter Notebook
•1•9•4•1•Updated Jun 29, 2023Jun 29, 2023
vitessce-data
Public
Utils for loading HuBMAP data formats
spatial omics single-cell imaging kharchenkolab hubmap vitessce hidivelab
Python
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MIT License
•4•6•14•2•Updated Oct 27, 2021Oct 27, 2021