westlake-repl

All

23 repositories

NRPStransformer
Public
A Transformer-Based Predictor for Nonribosomal Peptide Synthetases (NRPS) Specificity. Published in JACS (DOI: 10.1021/jacs.5c08076).
machine-learning bioinformatics deep-learning transformer protein-prediction nrps
Python
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MIT License
•2•4•0•0•Updated Sep 11, 2025Sep 11, 2025
LeanVAE
Public
[ICCV2025]LeanVAE: An Ultra-Efficient Reconstruction VAE for Video Diffusion Models
video-generation vae-pytorch latent-diffusion video-diffusion-model
Python
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MIT License
•3•43•2•0•Updated Sep 8, 2025Sep 8, 2025
SaprotHub
Public
Making Protein Modeling Accessible to All Biologists
protein-function-prediction protein-fitness protein-language-model foundation-models protein-language-model-finetuning fine-tuning-protein-language-model colabplm colabesm colabprotbert colab-esm1b
Jupyter Notebook
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MIT License
•14•118•2•0•Updated Aug 31, 2025Aug 31, 2025
TCF
Public
Python
•0•2•0•0•Updated Aug 29, 2025Aug 29, 2025
ProTrek
Public
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
protein-annotation protein-alignment contrastive-learning protein-language-model sequence-structure proteinclip protein-clip protein-text protein-text-search protein-natural-language-search
Python
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MIT License
•10•129•1•0•Updated Aug 25, 2025Aug 25, 2025
SaProt
Public
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
protein-structure protein representation-learning protein-sequence predicted-structures pretraining structure-aware protein-language-model alphafold2 foldseek
Python
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MIT License
•51•503•24•0•Updated Aug 19, 2025Aug 19, 2025
Cryo-IEF
Public
A comprehensive foundation model for cryo-EM image processing
JavaScript
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MIT License
•0•28•0•0•Updated Aug 14, 2025Aug 14, 2025
ESM-Ezy
Public
Python
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MIT License
•6•29•3•0•Updated Jul 30, 2025Jul 30, 2025
.github
Public
0•0•0•0•Updated Apr 9, 2025Apr 9, 2025
Denovo-Pinal
Public
Text-guided protein design
protein-design denovo-design text-protein denovo-design-text
Python
•7•83•0•0•Updated Apr 6, 2025Apr 6, 2025
PixelRec
Public
A Large-scale Multimodal Dataset for recommender System
recommender-system image-recommendation foundation-model large-language-model llm4rec visual-recommender-system large-image-dataset text-recommendation multimodal-recommendation multimodal-recommendation-dataset
Python
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MIT License
•10•159•1•0•Updated Mar 19, 2025Mar 19, 2025
Evolla
Public
ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.
structural-protein-sequences protein-generation protein2text protein-chatgpt protgpt multimodal-protein text-protein protein-gpt protchat prot-chat
Python
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MIT License
•5•57•1•0•Updated Mar 7, 2025Mar 7, 2025
IDvs.MoRec
Public
End-to-end Training for Multimodal Recommendation Systems
end-to-end multimodal multimodal-deep-learning image-recommendation foundation-models llm large-language-model foundation-recommendation-model text-recommendation transferable-recommendation
Python
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Apache License 2.0
•21•154•6•0•Updated Feb 2, 2025Feb 2, 2025
MicroLens
Public
A Large Short-video Recommendation Dataset with Raw Text/Audio/Image/Videos (Talk Invited by DeepMind).
video video-understanding large short-video video-generation audio-recommendation image-recommendation video-recommendation foundation-models large-language-models
Python
•16•212•4•0•Updated Jan 27, 2025Jan 27, 2025
NineRec
Public
Multimodal Dataset and Benchmark for Multi-domain and Cross-domain Recommendation System
multimodal one-for-all cross-domain-recommendation image-recommendation llm multi-modal-recommendation foundation-recommendation-model text-recommendation multimodal-recommenddation transfer-learning-recommendation
Python
•7•96•4•0•Updated Oct 6, 2024Oct 6, 2024
MMseqsTemplate
Public
Template for mmseqs search and cluster. Reduce identity between protein sequences.
Shell
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MIT License
•0•5•0•0•Updated Sep 24, 2024Sep 24, 2024
Recommendation-Systems-without-Explicit-ID-Features-A-Literature-Review
Public
Paper List of Pre-trained Foundation Recommender Models
recommendation-system recommender-system transfer-learning language-model multimodal multimodal-deep-learning transferable pre-training cross-domain-recommendation llm
27•363•0•0•Updated Aug 12, 2024Aug 12, 2024
ProteinLM-TDG2-Mutation
Public
Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing
enzyme mutation protein fitness-landscape crispr-cas9 protein-engineering base-editing llm large-language direct-evoluation
Jupyter Notebook
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MIT License
•1•18•0•0•Updated Jun 6, 2024Jun 6, 2024
Adapter4Rec
Public
Multi-domain Recommendation with Adapter Tuning
adapter cross-domain fine-tuning cross-domain-recommendation recommender-sytem multi-domain-learning prompt-tu parameter-efficient-tuning large-language-model foundation-recommendation-model
Python
•3•32•0•0•Updated Mar 21, 2024Mar 21, 2024
Multimodal-recommendation-datasets
Public
A repository listing important datasets for multimodal recommender systems
cross-domain-recommendation pre-trained-language-models image-recommendation foundation-recommendation-model text-recommendation transferable-recommendation multimodal-recommendation multi-domain-recommendation multimodal-recommendation-dataset llm-recommendation
1•21•0•0•Updated Mar 20, 2024Mar 20, 2024
deep-mutational-scan-evalation
Public
收集DeepSequence文献中的数据，提供一个统一的测试方法
Jupyter Notebook
•0•7•0•0•Updated Apr 3, 2023Apr 3, 2023
2022-NIPS-Tenrec
Public
Tenrec dataset for multiple recommendation tasks
Python
•36•2•0•0•Updated Feb 18, 2023Feb 18, 2023
westlake-repl
Public
0•1•0•0•Updated Oct 6, 2022Oct 6, 2022