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Merged
merged 394 commits into from
Oct 15, 2025
Merged

MITIM 4.0.0, with big refactoring of PORTALS and simulation modules #107

merged 394 commits into from
Oct 15, 2025

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@pabloprf
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@pabloprf pabloprf commented Aug 29, 2025 •
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To do's before release:

  • 1. Implementation of fibe / megpy within the MAESTRO fixed boundary options @aaronkho @gsnoep
  • 2. EPED-NN vs EPED beats/initializer separation @AudreySaltzman
  • 3. TRANSP docker instead of singularity (do you know think this will be done in a short time scale or we leave it for a future release @jo-hall ?)
  • 4. Better documentation

pabloprf and others added 30 commits August 6, 2025 17:33
@pabloprf
Bug fixes maestro after mitimstate transition
1f99998
@pabloprf
bug fix
1176868
@pabloprf
maestro plot bug fix
b7b6217
@pabloprf
Moved logger from BO to MAESTRO timings and removal of historical Log…
e9bdffa 
…ger object
@pabloprf
misc
5c43855
@pabloprf
Bug fix MAESTRO in new development changes
5f08280
@pabloprf
For now, until further fixes, do not require quends or vmecpp
73baf47
@pabloprf
Bug fix fast
66045a8
@pabloprf
Bug fix MAESTRO gacode_state
1919d78
@pabloprf
Bug fixes MAESTRO in new development
1c2015f
@pabloprf
misc
8628af8
@pabloprf
Bug fixes plot maestro
f8f4d8f
@pabloprf
better maestro plotting timings
b51ce94
@AudreySaltzman
Quick patch so that query_yes_no automatically responds yes if runnin…
cbd2cae 
…g on a non-interactive terminal.
@pabloprf
bug fix remote retrieval same name
48303e8
@pabloprf
misc
f1d2853
@AudreySaltzman
Adjust patch for interactive response required on slurm system to thr…
ba26164 
…ow an error instead of giving a warning
@pabloprf
Fixed bug EPED local
db12da5
@pabloprf
Removed deprecated options for direct tglf prep
479e277
@pabloprf
direct preparation should use what the input.gacode has
82e6915
@pabloprf
Removal of deprecated options
01f8c4c
@pabloprf
Minimal NEO object
daacd0f
@pabloprf
Minimal local neo example running
c054051
@pabloprf
Generalization of gacode simulation
705e6dc
@pabloprf
Generalization applied to NEO as well
3bd6548
@pabloprf
NEO module fully working
95e23af
@pabloprf
PORTALS working fully with standalone TGLF + NEO
91f1386
@pabloprf
Solved circular import
0e9c3b0
@pabloprf
Rotation in to_neo working
2a193b6
@pabloprf
NEO module and portals ready to ship
9957f65
AudreySaltzman and others added 18 commits October 8, 2025 15:02
@AudreySaltzman
Bug fix for EPEDbeat with squareness
8410158
@gsnoep
MAESTROplot: updated plot_g_quantities() to be compatible with megpy …
eaa3f85 
…migration
@pabloprf
Bug fix MAESTRO: make _to_mxh routine work even if flux surface is on…
a678440 
…e point, at the center
@pabloprf
Bug fix: FSA of Bt^2 and Bp^2 were swapped; and their calculation mis…
9a91daf 
…sed some radial dependence. Expect betas to change by <2%
@AudreySaltzman
Make the real frequency not normalized to ky
fdf330f
@aaronkho
Added FiBE equilibrium initialization method
04ef2c6
@aaronkho
Re-added FiBE installation dependency
30535b0
@aaronkho
Switched fibe dependency to main branch due to merge
122a597
@AudreySaltzman
Bug fix to run MAESTRObeat.py, uneven )
8d5ad5e
@pabloprf
Logic of keep_files had weird wording, now fixed to avoid user confusion
476bdab
@AudreySaltzman
Adjustments to make FIBE initializer work with MAESTRO
438d9b5
@aaronkho
Merge pull request #108 from pabloprf/fibe_integration
85e6a24 
Integrated FiBE as an equilibrium initialization option
Currently interface only uses a limited set of MXH coefficients and pre-defined profile shapes
@AudreySaltzman
Fix for pathlib compatibility
29938a5
@aaronkho
Updated megpy and fibe requirements to PyPI versions
10949cc
@pabloprf
Recover VITALS (after documentation followup)
8fe2b51
@pabloprf
Additional folder expansions for robustness (after documentation foll…
77febf2 
…owup)
@pabloprf
Updated documentation
5573f86
@pabloprf
Removed deprecated TGLF instructions
d602b66
@pabloprf pabloprf merged commit bb352df into main Oct 15, 2025
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@AudreySaltzman AudreySaltzman AudreySaltzman approved these changes

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7 participants

@pabloprf @AudreySaltzman @jo-hall @nthoward @gsnoep @aaronkho