pasqal-io
diff --git a/‎.coveragerc‎
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diff --git a/‎.github/CODEOWNERS‎
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diff --git a/‎.github/scripts/package.sh‎
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diff --git a/‎.github/workflows/ci.yml‎
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diff --git a/‎.github/workflows/publish.yml‎
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diff --git a/‎.github/workflows/pulser-setup/action.yml‎
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diff --git a/‎.github/workflows/test.yml‎
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diff --git a/‎.gitignore‎
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diff --git a/‎.mypy.ini‎
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diff --git a/‎.pre-commit-config.yaml‎
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@@ -20,4 +20,3 @@ show_missing = True
 source =
     pulser-core/pulser/
     pulser-simulation/pulser_simulation/
-    pulser-pasqal/pulser_pasqal/
@@ -0,0 +1,2 @@
+pulser-simulation/ @pasqal-io/emulation-team
+tests/pulser_simulation/* @pasqal-io/emulation-team
@@ -15,12 +15,12 @@ packages=$(cat packages.txt)
 for pkg in $packages
 do
   echo "Packaging $pkg"
-  python $pkg/setup.py -q bdist_wheel -d "../dist"
+  python -m build $pkg --wheel -o "dist"
   rm -r $pkg/build
 done
 
 # Build the pulser metapackage
-python setup.py -q bdist_wheel -d "dist"
+python -m build --wheel -o "dist"
 rm -r build
 
 echo "Built wheels:"
 
@@ -30,6 +30,17 @@ jobs:
           extra-packages: black
       - name: Check formatting with black
         run: black --check --diff .
+  ruff:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out Pulser
+        uses: actions/checkout@v4
+      - name: pulser + ruff install
+        uses: ./.github/workflows/pulser-setup
+        with:
+          extra-packages: ruff
+      - name: Check numpy v2 compatibility with ruff
+        run: ruff check
   isort:
     runs-on: ubuntu-latest
     steps:
@@ -58,8 +69,19 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.9", "3.12"]
+        python-version: ["3.9", "3.13"]
         with-torch: ["with-torch", "no-torch"]
+        numpy: ["numpy-v1", "numpy-v2"]
+        include:
+          - python-version: "3.12"
+            numpy: "numpy-v1"
+            with-torch: "with-torch"
+        exclude:
+          # Numpy v1 does not support Python 3.13
+          - python-version: "3.13"
+            numpy: "numpy-v1"
+          - numpy: "numpy-v1"
+            with-torch: "no-torch"
     steps:
       - name: Check out Pulser
         uses: actions/checkout@v4
@@ -69,11 +91,12 @@ jobs:
           python-version: ${{ matrix.python-version }}
           extra-packages: pytest
           with-torch: ${{ matrix.with-torch }}
+          numpy: ${{ matrix.numpy }}
       - name: Run the unit tests & generate coverage report
-        if: ${{ matrix.with-torch == 'with-torch' }}
+        if: ${{ matrix.with-torch == 'with-torch' &&  matrix.numpy == 'numpy-v1'}}
         run: pytest --cov --cov-fail-under=100
       - name: Run the unit tests without torch installed
-        if: ${{ matrix.with-torch != 'with-torch' }}
+        if: ${{ matrix.with-torch != 'with-torch' || matrix.numpy != 'numpy-v1'}}
         run: pytest --cov
       - name: Test validation with legacy jsonschema
         run: |
 
@@ -23,14 +23,16 @@ jobs:
       - name: Install Python dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install setuptools wheel
+          pip install -U setuptools build
       - name: Build packages
         shell: bash
         run: ./.github/scripts/package.sh
       - name: Publish to TestPyPI
         uses: pypa/gh-action-pypi-publish@release/v1
         with:
           repository-url: https://test.pypi.org/legacy/
+          skip-existing: true  # Allows repeating the action
+          attestations: false  # Otherwise an attestation is added to dist/
       - name: Install from TestPyPI
         timeout-minutes: 5
         shell: bash
@@ -66,7 +68,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
     steps:
       - name: Check out Pulser
         uses: actions/checkout@v4
 
@@ -13,6 +13,10 @@ inputs:
     description: Whether to include pytorch
     required: false
     default: "with-torch"
+  numpy:
+    description: Which version of numpy to install
+    required: false
+    default: "numpy-v2"
 runs:
   using: "composite"
   steps:
@@ -33,6 +37,16 @@ runs:
       run: |
         python -m pip install --upgrade pip
         make dev-install-no-torch
+    - name: Install numpy v1
+      if: ${{ inputs.numpy == 'numpy-v1'}}
+      shell: bash
+      run: |
+        pip install numpy==1.26
+    - name: Install numpy v2
+      if: ${{ inputs.numpy == 'numpy-v2'}}
+      shell: bash
+      run: |
+        pip install numpy>=2
     - name: Install extra packages from the dev requirements
       if: "${{ inputs.extra-packages != '' }}"
       shell: bash
 
@@ -15,20 +15,16 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        # Python 3.9 does not run on macos-latest (14)
-        # Uses macos-13 for 3.9 and macos-latest for >=3.10 
-        os: [ubuntu-latest, macos-13, macos-latest, windows-latest]
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        numpy: ["numpy-v1", "numpy-v2"]
         with-torch: ["with-torch", "no-torch"]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
         exclude:
-          - os: macos-latest
-            python-version: "3.9"
-          - os: macos-13
-            python-version: "3.10"
-          - os: macos-13
-            python-version: "3.11"
-          - os: macos-13
-            python-version: "3.12"
+          # Numpy v1 does not support Python 3.13
+          - python-version: "3.13"
+            numpy: "numpy-v1"
+          - numpy: "numpy-v1"
+            with-torch: "no-torch"
     steps:
       - name: Check out Pulser
         uses: actions/checkout@v4
@@ -37,6 +33,7 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
           extra-packages: pytest
+          numpy: ${{ matrix.numpy }}
           with-torch: ${{ matrix.with-torch }}
       - name: Run the unit tests & generate coverage report
         run: pytest --cov
@@ -13,6 +13,7 @@ _build
 __pycache__/
 build/
 docs/build/
+_autosummary/
 dist/
 env*
 *.egg-info/
 
@@ -2,7 +2,6 @@
 files = 
     pulser-core/pulser, 
     pulser-simulation/pulser_simulation,
-    pulser-pasqal/pulser_pasqal, 
     tests
 python_version = 3.11
 warn_return_any = True
 
@@ -5,10 +5,17 @@ repos:
       - id: black-jupyter
 
   - repo: https://github.com/PyCQA/flake8
-    rev: 4.0.1
+    rev: 7.1.1
     hooks:
       - id: flake8
 
+  # Ruff only checks numpy v2 compatibility at this moment
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.11.1
+    hooks:
+      - id: ruff
+        args: [ --fix ]
+
   - repo: https://github.com/pycqa/isort
     rev: 5.12.0
     hooks:
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+pulser-simulation/ @pasqal-io/emulation-team`
	`2`	`+tests/pulser_simulation/* @pasqal-io/emulation-team`