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jan-janssenjan-janssen
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Update continuous integration environment (#318)
* Update continuous integration environment * update readme
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‎.github/workflows/automerge.yml

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‎.github/workflows/black.yml

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‎.github/workflows/format_black.yml

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‎.github/workflows/mini.yml

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‎.github/workflows/pipeline.yml

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name: Pipeline
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on:
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push:
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branches: [ main ]
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pull_request:
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jobs:
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black:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: psf/black@stable
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with:
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options: "--check --diff"
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src: ./${{ github.event.repository.name }}
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black_fix: # in most cases pre-commit is faster
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needs: [black]
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if: failure()
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }}
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ref: ${{ github.event.pull_request.head.ref }} # Check out the head of the actual branch, not the PR
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fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
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- name: format black
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uses: psf/black@stable
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with:
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options: ""
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src: "./${{ github.event.repository.name }}"
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- name: commit
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run: |
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git config --local user.email "pyiron@mpie.de"
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git config --local user.name "pyiron-runner"
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git commit -m "Format black" -a
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- name: push
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uses: ad-m/github-push-action@master
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with:
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github_token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }}
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branch: ${{ github.event.pull_request.head.ref }}
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minimal:
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needs: [black]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Conda config
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run: echo -e "channels:\n - conda-forge\n" > .condarc
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- name: Setup Mambaforge
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uses: conda-incubator/setup-miniconda@v3
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with:
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python-version: '3.12'
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miniforge-version: latest
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condarc-file: .condarc
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environment-file: .ci_support/environment_mini.yml
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- name: Test
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shell: bash -l {0}
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timeout-minutes: 30
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run: |
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pip install versioneer[toml]==0.29
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pip install . --no-deps --no-build-isolation
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python -m unittest discover tests
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pip_check:
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needs: [black]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Conda config
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run: echo -e "channels:\n - conda-forge\n" > .condarc
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- name: Setup Mambaforge
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uses: conda-incubator/setup-miniconda@v3
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with:
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python-version: '3.12'
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miniforge-version: latest
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condarc-file: .condarc
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environment-file: .ci_support/environment.yml
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- name: Pip check
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shell: bash -l {0}
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run: |
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pip install versioneer[toml]==0.29
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pip install . --no-deps --no-build-isolation
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python -m pip check
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unittest_matrix:
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needs: [black]
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runs-on: ${{ matrix.operating-system }}
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strategy:
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matrix:
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include:
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- operating-system: windows-latest
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python-version: '3.12'
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label: win-64-py-3-12
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- operating-system: macos-latest
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python-version: '3.12'
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label: osx-64-py-3-12
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- operating-system: ubuntu-latest
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python-version: '3.12'
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label: linux-64-py-3-12
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- operating-system: ubuntu-latest
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python-version: '3.11'
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label: linux-64-py-3-11
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- operating-system: ubuntu-latest
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python-version: '3.10'
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label: linux-64-py-3-10
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steps:
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- uses: actions/checkout@v4
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- name: Merge conda environment
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if: matrix.operating-system != 'windows-latest'
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run: tail --lines=+4 .ci_support/environment-lammps.yml >> .ci_support/environment.yml
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- name: Conda config
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shell: bash -l {0}
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run: echo -e "channels:\n - conda-forge\n" > .condarc
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- name: Setup Mambaforge
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uses: conda-incubator/setup-miniconda@v3
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with:
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python-version: ${{ matrix.python-version }}
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miniforge-version: latest
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condarc-file: .condarc
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environment-file: .ci_support/environment.yml
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- name: Test
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shell: bash -l {0}
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timeout-minutes: 30
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run: |
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pip install versioneer[toml]==0.29
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pip install . --no-deps --no-build-isolation
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coverage run --omit="structuretoolkit/_version.py,tests/*" -m unittest discover tests
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coverage xml
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- name: Coverage
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if: matrix.label == 'linux-64-py-3-12'
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uses: coverallsapp/github-action@v2
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unittest_old:
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needs: [black]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Conda config
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run: echo -e "channels:\n - conda-forge\n" > .condarc
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- name: Setup Mambaforge
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uses: conda-incubator/setup-miniconda@v3
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with:
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python-version: '3.9'
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miniforge-version: latest
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condarc-file: .condarc
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environment-file: .ci_support/environment-old.yml
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- name: Test
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shell: bash -l {0}
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timeout-minutes: 30
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run: |
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pip install versioneer[toml]==0.29
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pip install . --no-deps --no-build-isolation
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python -m unittest discover tests
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autobot:
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needs: [unittest_old, unittest_matrix, pip_check, minimal]
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permissions:
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contents: write
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pull-requests: write
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runs-on: ubuntu-latest
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if: (github.event.pull_request.user.login == 'dependabot[bot]' || github.event.pull_request.user.login == 'pre-commit-ci[bot]')
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steps:
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- name: Enable auto-merge for bot PRs
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run: gh pr merge --auto --squash "$PR_URL"
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env:
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PR_URL: ${{github.event.pull_request.html_url}}
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GH_TOKEN: ${{secrets.GITHUB_TOKEN}}

‎.github/workflows/pypicheck.yml

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‎.github/workflows/unittests.yml

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